BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470110
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01650.1 | Symbols: SPPL4, ATSPPL4 | SIGNAL PEPTIDE PEPTIDAS... 3241 0.0
> AT1G01650.1 | Symbols: SPPL4, ATSPPL4 | SIGNAL PEPTIDE PEPTIDASE-LIKE
4 | chr1:232841-237817 REVERSE LENGTH=2140
Length=2140
Score = 3241 bits (1755), Expect = 0.0
Identities = 1891/1955 (97%), Gaps = 15/1955 (1%)
Strand=Plus/Plus
Query 1 ttttttttccctcttctc-tct-ttctctctct-t-gttccttgtaccttcctgcatttt 56
|||||||||||||||||| ||| |||||||||| | |||| |||||||||||| || |||
Sbjct 33 TTTTTTTTCCCTCTTCTCTTCTCTTCTCTCTCTCTCGTTCATTGTACCTTCCTCCA-TTT 91
Query 57 tttctccatctttcctctctaatctttttatcttcttcttcttctcccctccttttAACG 116
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 92 TTTCTCCATCTTTCCTCTCTAATCTTTTTATCTTCTTTTTCTTCTTCCCTCCTTTTAACG 151
Query 117 ATTCTGTGGAGAGTGTATCAGTTATGATCTTGTGGAAATCTCTCAGCTGTTTCTCGTTCG 176
|||| |||||| || | | |||||||||||||||||||||||| |||||||||||||
Sbjct 152 ATTCCGTGGAGTCTGGA--A--TATGATCTTGTGGAAATCTCTCAGTTGTTTCTCGTTCG 207
Query 177 TCTTCGGCTTGTTGTTGTACAGTGCTAGTTTCGTTTCTGCTGGAGACATAGTTCACCACG 236
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 208 TCTTCGGGTTGTTGTTGTACAGTGCTAGTTTCGTTTGTGCTGGAGACATAGTTCACCACG 267
Query 237 ACGATTCGCTTCCCCAGAGACCTGGTTGCAACAACAATTTCGTACTGGTGAAAGTCCCAA 296
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 268 ACGATTCGCTTCCGCAGAGACCTGGTTGCAACAACAATTTCGTTCTGGTGAAAGTCCCAA 327
Query 297 CTCGAGTTAATGGGTCCGAATACACGGAGTTTGTTGGTGTTGGTGCTAGGTTTGGCCCAA 356
||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 328 CTCGAGTCAATGGGTCGGAGTACACGGAGTATGTTGGTGTTGGTGCTAGGTTTGGCCCAA 387
Query 357 CCTTGGAATCTAAGGAGAAACGTGCTACCCTCATCAAACTTGCTATTGCAGACCCTCCTG 416
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 388 CCTTGGAATCTAAGGAGAAACATGCTACCCTCATCAAACTTGCTATTGCTGACCCTCCTG 447
Query 417 ATTGTTGCAGCACTCCCAAAAATAAGCTTACAGGAGAGGTCATTCTTGTTCATCGTGGTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ATTGTTGCAGCACTCCCAAAAATAAGCTTACAGGAGAGGTCATTCTTGTTCATCGTGGTA 507
Query 477 AATGCAGTTTTACCGCTAAAACAAAGGTTGCTGAAGCAGCTGGTGCCTCCGCCATCCTTA 536
|||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 508 AATGCAGTTTTACCACCAAAACTAAGGTTGCTGAAGCAGCTGGTGCCTCTGCCATCCTTA 567
Query 537 TCATAAACAACAGTACAGATCTTTTCAAGATGGTCTGCGAGAAGGGTGAAAACGTTTTAG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TCATAAACAACAGTACAGATCTTTTCAAGATGGTCTGCGAGAAGGGTGAAAACGTTTTAG 627
Query 597 ACATAACTATTCCTGTTGTTATGCTACCCGTTGATGCTGGTAGAAGTCTGGAGGACATAG 656
| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 628 ATATTACTATTCCTGTTGTTATGCTACCTGTTGATGCTGGTAGAAGTCTGGAGAACATAG 687
Query 657 TCAAAAGTAACTCTATAGTTACTTTGCAGCTCTACTCACCGAAACGTCCAGCAGTTGATG 716
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 688 TCAAAAGTAACGCTATAGTTACTCTGCAGCTCTACTCGCCGAAACGTCCAGCAGTTGATG 747
Query 717 TGGCTGAGGTCTTTCTCTGGCTTATGGCTGTCGGTACCATTTTATGTGCTTCTTATTGGT 776
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TGGCTGAGGTCTTTCTTTGGCTTATGGCTGTCGGTACCATTTTATGTGCTTCTTATTGGT 807
Query 777 CTGCGTGGACTGTCAGGGAAGAAGCTATTGAGCAAGACAAGCTGCTAAAGGACGGATCAG 836
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CTGCGTGGACCGTCAGGGAAGAAGCTATTGAGCAAGACAAGCTGCTAAAGGACGGATCAG 867
Query 837 ATGAACTTTTGCAGTTATCAACCACCAGCTCTAGAGGTGTTGTTGAGGTCACCGTGATAT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 ATGAACTTTTGCAGTTATCAACCACCAGCTCTAGAGGTGTTGTTGAGGTCACCGTGATAT 927
Query 897 CAGCAATTTTGTTTGTAGTGGTTGCTTCTTGTTTCCTGATCATGCTCTACAAGCTTATGT 956
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 928 CAGCAATTTTGTTTGTAGTGGTGGCTTCTTGTTTCCTGATCATGCTCTACAAGCTTATGT 987
Query 957 CATTCTGGTTTATAGAGGTGTTGGTGGTACTCTTTTGCATAGGTGGCGTAGAGGGGCTGC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CATTCTGGTTTATAGAGGTGTTGGTGGTACTCTTTTGCATAGGTGGCGTAGAGGGGCTGC 1047
Query 1017 AAACCTGTTTGGTCGCCT-TACTCTCATGTTTCAGATGGTTCCGCCGCTTTGGAGAATCA 1075
|||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 AAACTTGTTTGGTC-TCTCTACTCTCATGTTTCAGATGGTTCCGCCGCTTTGGAGAATCA 1106
Query 1076 TATCTCAAAGTTCCTATCCTGGGTGCTGTCTCATACTTGACTCTGGCTATATGTCCCTTT 1135
||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1107 TATGTCAAAGTTCCTTTCCTGGGTGCTGTCTCATACTTGACTCTGGCTATTTGTCCCTTT 1166
Query 1136 TGCATAGCATTTGCTGTATTTTGGGCAGTTAAACGCCAATACTCTTATGCTTGGATAGGG 1195
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1167 TGCATAGCATTTGCTGTATTTTGGGCGGTTAAACGTCAATACTCTTATGCTTGGATAGGG 1226
Query 1196 CAAGATATACTTGGAATCTCACTGATAATCACGGTTCTTCAAATTGTCCGCGTACCAAAT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 CAAGATATACTTGGAATCTCACTGATAATCACGGTTCTTCAAATTGTCCGCGTACCAAAT 1286
Query 1256 CTTAAGGTCGGGTTTGTTCTTCTCAGCTGTGCCTTCATGTATGACATCTTCTGGGTTTTT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 CTTAAGGTCGGGTTTGTTCTTCTCAGCTGTGCCTTCATGTATGACATCTTCTGGGTTTTT 1346
Query 1316 GTTTCAAAATGGTGGTTCCGTGAAAGCGTGATGATTGTGGTAGCCCGTGGTGACAGAAGC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 GTTTCAAAATGGTGGTTCCGTGAAAGCGTGATGATTGTGGTAGCCCGTGGTGACAGAAGC 1406
Query 1376 GGAGAGGACGGAATTCCAATGCTACTAAAGATCCCACGAATGTTTGATCCTTGGGGTGGC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGAGAGGACGGAATTCCAATGCTACTAAAGATCCCACGAATGTTTGATCCTTGGGGTGGC 1466
Query 1436 TACAGCATAATTGGATTTGGTGACATCATCTTACCAGGACTGCTTGTAACTTTCGCACTG 1495
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1467 TACAGCATAATTGGATTTGGTGACATTATCTTACCAGGACTGCTTGTAACTTTCGCACTG 1526
Query 1496 AGGTACGACTGGCTGGCGAACAAGAGGCTAAAGTCAGGATACTTCCTTGGGACAATGTCT 1555
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1527 AGGTACGACTGGCTGGCGAACAAGAGGCTAAAGTCAGGGTACTTCCTTGGGACAATGTCT 1586
Query 1556 GCTTATGGTCTAGGTCTTCTCATAACATACATAGCTCTAAACTTGATGGACGGACATGGA 1615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 GCTTATGGTCTAGGTCTTCTCATAACATACATAGCTCTAAACTTGATGGACGGACATGGG 1646
Query 1616 CAACCGGCTCTGCTTTACATCGTCCCATTCATACTCGGTACTTTGTTCGTGTTGGGTCAC 1675
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1647 CAACCGGCTCTGCTTTACATCGTCCCATTCATACTAGGTACTTTGTTCGTGTTGGGTCAC 1706
Query 1676 AAGAGAGGTGACCTGAAGACGCTGTGGACAACAGGGGAACCCGACAGGCCATGCCCTCAC 1735
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 AAGAGAGGTGACTTGAAGACGCTGTGGACAACAGGGGAACCCGACAGGCCATGCCCTCAC 1766
Query 1736 GTTCGTCTTCAACCTCAATCGTCTTAAAACAAGCTACTATGTATCAGATGAGAACAGATC 1795
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1767 GTTCGTCTTCAACCTCAATCGTCTTAAAACAACCTGCTATGTATCAGATGGGAACAGATA 1826
Query 1796 AAAATCAGATGATCCTCTAGtttttttt-ATTGTTAATACAACACACCCCTTCTTAGGTC 1854
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1827 AAAATCAGATGATCCTCTAGTTTTTTTTTATTGTTAATACAACACACCCCTTCTTAGGTC 1886
Query 1855 TATATATATATGTCTCTGTACGCTTTCACACAACTAGACAGGAGAGCCCATACCACATTT 1914
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 -A-ATATATATGTCTCTGTACGCTTTCACACAACTAGACAGGAGAGCCCATACCACATTT 1944
Query 1915 GCCTTAA-TAACTCTTTTAACCTCTCTTGCTAGTT 1948
||||||| |||||||||||||||||||||||||||
Sbjct 1945 GCCTTAAATAACTCTTTTAACCTCTCTTGCTAGTT 1979
Score = 100 bits (54), Expect = 4e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1947 TTGGCTTCTTTTCCTGAGTCATGATGATCAGATTTTCTTCTATGATATACATATGTCCAA 2006
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2015 TTGGCTTCTTTTCCTGAGTCATGATGATCAGATTTTCTTCTATAACATACATATGTCCAA 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99397079100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5