BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470113
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01630.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 1552 0.0
> AT1G01630.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:229013-230917 FORWARD LENGTH=1203
Length=1203
Score = 1552 bits (840), Expect = 0.0
Identities = 959/1015 (94%), Gaps = 14/1015 (1%)
Strand=Plus/Plus
Query 1 ATAAATGAGTAGAA--TTTCTAAGG-A-AGAGTAGTTGGTGAGCGTCGCCATTGAAGGGG 56
|||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 ATAAATGAGTAGAATTTTTGTAAGGAAGAGAGTAGTTGGTGAGCGTCGCCATTGAAGGGG 60
Query 57 AAAGAAGCCCAACTTTGCATTGAATGATACTT-AGATCTTTGTCTCAGCAGCTGTCTCCA 115
|||| |||||||||||||||||||||| |||| | |||||| ||||||||||||||| ||
Sbjct 61 AAAGCAGCCCAACTTTGCATTGAATGACACTTAAAATCTTTCTCTCAGCAGCTGTCTTCA 120
Query 116 TTTATGATCGATCCCAACCTGTGTCTTCTCTCTACCAATTTCAAGATCTGGTCGTCGCTC 175
|||||||||||| || || | | |||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTATGATCGAT-CCTACTTCTTTCTTCTCTCTACCAATTTCAAGATCTGGTCGTCGCTC 179
Query 176 ACCGGAGAAACGTAATGGAAAAGAAAGAGACCAAGGAAGAACCAGCACCAGCACCAGCTG 235
|| ||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||
Sbjct 180 ACAGGAGAAACGTAATGGAAAACAAAGAGACCAAGCAAGAACCAG---CAGCAGCAGCTG 236
Query 236 AGCAAGAGAATGGTCCGTTGATTGAAGATGAGATCGAGAGGAGCAAAGTCGGGATCATGA 295
||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 237 AGCAAAAGACCGTTCCGTTGATCGAAGATGAGATCGAGAGGAGCAAAGTCGGGATCATGA 296
Query 296 GAGCTCTCTGCGACCGACAAGATCCTGAAACTAAGGAGGTGGATGATCTGATGATAAGGA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAGCTCTCTGCGACCGACAAGATCCTGAAACTAAGGAGGTGGATGATCTGATGATAAGGA 356
Query 356 GGTTTCTGAGAGCGCGTGACCTCGACATTGAAAAGGCTTCAACGATGTTTCTAAAGTACC 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 357 GGTTTCTGAGAGCGCGTGACCTGGACATTGAAAAGGCTTCAACGATGTTTCTAAATTACC 416
Query 416 TGACTTGGAAGAGAAGCATGCTCCCAAAGGGGCACATACCAGAAGCAGAGATTGCAAATG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGACTTGGAAGAGAAGCATGCTCCCAAAGGGGCACATACCAGAAGCAGAGATTGCAAATG 476
Query 476 A-CTTGTCGCATAACAAGGTGTGTATGCAAGGTCATGACAAGATGGGTCGACCCATTGTT 534
| || |||||||||||| |||||||||||||||||||||||||||||||||| || | |
Sbjct 477 ATCTA-TCGCATAACAAGATGTGTATGCAAGGTCATGACAAGATGGGTCGACCTATCGCT 535
Query 535 GTTGCCATTGGGAACAGACATAACCCTTCCAAAGGTAACCTTGACGAGTTCAAGCGtttt 594
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 536 GTTGCCATTGGGAACAGACATAACCCTTCCAAAGGCAACCCTGACGAGTTCAAGCGTTTT 595
Query 595 tttGTCTACACGCTCGAGAAGATATGCGCTAGAATGCCGAGAGGTCAAGAGAAATTCGTA 654
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 596 GTTGTCTACACGCTCGAGAAGATTTGTGCTAGAATGCCGAGAGGTCAAGAGAAATTCGTA 655
Query 655 TCAATTGGAGATCTTCAAGGCTGGGGATATTCTAATTGTGACATCCGTGGCTACCTTGCT 714
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCAATTGGAGATCTGCAAGGCTGGGGATATTCTAATTGTGACATCCGTGGCTACCTTGCT 715
Query 715 GCTCTTTCCACTTTGCAGGATTGTTACCCAGAGAGATTGGGGAAACTATATATAGTTCAT 774
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 716 GCTCTTTCCACTTTGCAGGATTGTTACCCAGAGAGATTAGGGAAACTCTATATAGTTCAT 775
Query 775 GCACCCTACATTTTCATGACCGCATGGAAGGTCATTTATCCTTTAATCGACGCCAACACC 834
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 776 GCCCCCTACATTTTCATGACCGCATGGAAGGTCATTTATCCTTTTATCGACGCCAACACC 835
Query 835 AAGAAAAAGATTGTTTTCGTGGAGAACAAGAAACTCACTCCAACGCTACTCGAAGACATA 894
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 836 AAGAAAAAGATTGTTTTCGTGGAGAACAAGAAACTCACTCCAACGCTGCTTGAAGACATA 895
Query 895 GACGAAAGCCAACTTCCCGACATCTACGGAGGCAAATTGCCACTTGTTCCTATTCAGGAG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GACGAAAGCCAACTTCCCGACATCTACGGAGGCAAATTGCCACTTGTTCCTATTCAGGAG 955
Query 955 ACCTAATTATAGGTTTTACTACGGCGGCCCACCTCTATTTCTAAATTATTACTTA 1009
|||| ||||||||| |||||||||| || ||||||||||| |||||||||||||
Sbjct 956 ACCTGATTATAGGTCTTACTACGGC--CC-ACCTCTATTTCCAAATTATTACTTA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5