BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470115
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01620.1 | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane i... 1469 0.0
AT2G45960.3 | Symbols: PIP1B, TMP-A, ATHH2, PIP1;2 | plasma mem... 739 0.0
AT4G23400.1 | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsi... 621 4e-177
AT2G16850.1 | Symbols: PIP3B, PIP2;8 | plasma membrane intrinsi... 324 1e-87
> AT1G01620.1 | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane
intrinsic protein 1C | chr1:225665-227302 REVERSE LENGTH=1308
Length=1308
Score = 1469 bits (795), Expect = 0.0
Identities = 858/889 (97%), Gaps = 2/889 (0%)
Strand=Plus/Plus
Query 62 CACTTTAACGTTTTCTAGAGAGAGAGATGGAAGGGAAAGAAGAGGATGTTCGAGTGGGAG 121
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 103 CACTTGAACGTTTTCT--AGATAGAGATGGAAGGGAAAGAAGAGGATGTTCGAGTGGGAG 160
Query 122 CGAACAAGTTCCCAGAGAGGCAACCCATAGGGACGTCGGCTCAGACGGACAAAGACTACA 181
| ||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 161 CTAACAAGTTCCCGGAGAGGCAACCGATAGGTACATCGGCTCAGACGGACAAAGACTACA 220
Query 182 AGGAGCCACCACCAGCTCCACTGTTCGAGCCAGGCGAGCTGAGTTCATGGTCCTTCTACA 241
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 221 AGGAGCCACCACCAGCTCCATTTTTCGAGCCAGGCGAGCTGAGTTCGTGGTCCTTCTACA 280
Query 242 GAGCCGGAATCGCCGAGTTCATAGCCACATTCCTGTTTCTATACATCACAGTATTGACAG 301
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 281 GAGCCGGAATCGCCGAGTTCATAGCCACCTTCCTGTTTCTATACATAACAGTATTGACAG 340
Query 302 TGATGGGAGTGAAGAGAGCACCAAACATGTGTGCCTCTGTTGGAATCCAAGGCATTGCTT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TGATGGGAGTGAAGAGAGCACCAAACATGTGTGCCTCTGTTGGAATCCAAGGCATTGCTT 400
Query 362 GGGCTTTTGGAGGCATGATCTTTGCCCTTGTCTACTGTACTGCTGGAATCTCTGGTGGAC 421
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 401 GGGCTTTCGGTGGCATGATCTTTGCCCTTGTCTACTGTACTGCTGGAATCTCTGGTGGGC 460
Query 422 ACATAAACCCAGCGGTGACATTTGGTCTGTTCTTGGCTCGTAAACTGTCATTGACGAGAG 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 461 ACATAAACCCAGCGGTGACATTTGGTCTGTTCTTGGCTCGTAAGCTGTCATTGACGAGAG 520
Query 482 CTGTCTTCTACATCGTGATGCAATGTCTCGGAGCCATCTGCGGCGCCGGAGTTGTCAAAG 541
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CTGTCTTTTACATCGTGATGCAATGTCTCGGAGCCATCTGCGGCGCCGGAGTTGTCAAAG 580
Query 542 GCTTCCAGCCAAATCCTTACCAAACTCTCGGCGGAGGAGCCAACACCGTCGCTCACGGCT 601
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 581 GCTTCCAGCCAAATCCTTACCAAACTCTCGGCGGAGGAGCCAACACAGTCGCTCACGGCT 640
Query 602 ACACTAAGGGCTCTGGTTTGGGCGCTGAGATCATCGGAACCTTCGTCCTTGTCTACACGG 661
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 641 ACACTAAGGGCTCTGGTTTGGGTGCTGAGATAATCGGAACCTTCGTCCTTGTCTACACGG 700
Query 662 TCTTCTCCGCCACTGACGCCAAGAGAAGCGCTCGTGACTCCCACGTGCCGATTTTGGCTC 721
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 701 TCTTCTCCGCCACTGACGCCAAGAGAAGCGCTCGTGACTCCCACGTTCCGATTTTGGCAC 760
Query 722 CACTCCCAATCGGATTCGCTGTGTTCTTGGTTCACTTGGCGACGATTCCGATAACCGGAA 781
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 761 CACTCCCAATCGGATTCGCTGTGTTCTTGGTTCACTTGGCGACGATTCCAATCACCGGAA 820
Query 782 CCGGAATCAACCCAGCAAGGAGTCTTGGAGCTGCAATCATCTACAACAAGGACCACGCTT 841
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CAGGAATTAACCCAGCTAGGAGTCTTGGAGCTGCAATCATCTACAACAAGGACCACGCTT 880
Query 842 GGGACGACCACTGGATATTCTGGGTAGGACCATTCATTGGAGCAGCTCTTGCGGCTCTTT 901
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 881 GGGACGACCACTGGATATTCTGGGTCGGACCATTCATTGGAGCAGCTCTTGCGGCTCTTT 940
Query 902 ACCACCAACTTGTCATCAGAGCCATTCCATTCAAGTCCAGAACCTGATT 950
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 941 ACCACCAACTTGTCATCAGAGCCATTCCATTCAAGTCCAGATCCTGATT 989
> AT2G45960.3 | Symbols: PIP1B, TMP-A, ATHH2, PIP1;2 | plasma membrane
intrinsic protein 1B | chr2:18910295-18911982 FORWARD
LENGTH=1299
Length=1299
Score = 739 bits (400), Expect = 0.0
Identities = 721/877 (82%), Gaps = 18/877 (2%)
Strand=Plus/Plus
Query 78 AGAGAGAGAGATGGAAGGGAAAGAAGAGGATGTTCGAGTGGGAGCGAACAAGTTCCCAGA 137
|||||||||||||||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct 146 AGAGAGAGAGATGGAAGGTAAAGAAGAAGATGTTAGAGTCGGAGCTAACAAGTTTCCGGA 205
Query 138 GAGGCAACCCATAGGGACGTCGGCTCAGACG-GACAAAGACTACAAGGAGCCACCACCAG 196
||||||||| || || || |||||||||| | ||||| |||||||| ||||||||||| |
Sbjct 206 GAGGCAACCGATCGGAACTTCGGCTCAGA-GTGACAAGGACTACAAAGAGCCACCACCTG 264
Query 197 CTCCACTGTTCGAGCCAGGCGAGCTGAG-TTCATGGTCCTTCTACAGAGCCGGAATCGCC 255
| || |||||||||| |||||||| || |||||||||||||| ||||| || || ||
Sbjct 265 CGCCGTTGTTCGAGCCCGGCGAGCT-AGCTTCATGGTCCTTCTGGAGAGCTGGGATTGCT 323
Query 256 GAGTTCATAGCCACATTCCTGTTTCTATACATCACAGTATTGACAGTGATGGGAGTGAAG 315
||||| ||||| || || |||| || |||||||| || ||||| || ||||| ||||||
Sbjct 324 GAGTTTATAGCTACGTTTTTGTTCCTGTACATCACTGTTTTGACTGTTATGGGTGTGAAG 383
Query 316 AGAG-CACCAAACATGTGTGCCTCTGTTGGAATCCAAGGCATTGCTTGGGCTTTTGGAGG 374
|| | |||| ||||||||||| || || ||||||||||| || ||||||||||| || ||
Sbjct 384 AG-GTCACCGAACATGTGTGCTTCCGTCGGAATCCAAGGTATCGCTTGGGCTTTCGGTGG 442
Query 375 CATGATCTTTGCCCTTGTCTACTGTACTGCTGGAATCTCTGGTGGACACATAAACCCAGC 434
|||||||| || || |||||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct 443 TATGATCTTCGCTCTCGTCTACTGCACCGCTGGTATCTCCGGTGGACACATCAACCCAGC 502
Query 435 GGTGACATTTGGTCTGTTCTTGGCTCGTAAACTGTCATTGACGA-GAGCTGTCTTCTACA 493
||| || || ||| ||||||| ||| | || || || | || | ||||||| | |||||
Sbjct 503 GGTTACGTTCGGTTTGTTCTTAGCTAGGAAGCTTTCGCTCAC-ACGAGCTGTGTACTACA 561
Query 494 TCGTGATGCAATGTC-TCGGAGCCATCTGCGGCGCCGGAGTTGTCAAAGGCTTCCAGCCA 552
| |||||||| || | | ||||| ||||| || || || || ||||| || |||||||||
Sbjct 562 TAGTGATGCAGTG-CTTAGGAGCTATCTGTGGAGCTGGTGTGGTCAAGGGGTTCCAGCCA 620
Query 553 AATCCTTACCAAACTCTCGGCGGAGGAGCCAACACCGTCGCTCACGGCTACACTAAGGGC 612
|| | ||||| || | || || |||||||||||| | ||||| |||||||| || ||
Sbjct 621 AAGCAATACCAGGCTTTGGGAGGTGGAGCCAACACCATAGCTCATGGCTACACCAAAGGA 680
Query 613 TCTGGT-TTGGGCGCTGAGATCATCGGAACCTTCGTCCTTGTCTACACGGTCTTCTCCGC 671
|||| || || |||||||| || |||||||| |||||||| ||||| |||||||| ||
Sbjct 681 AGTGGTCTT-GGAGCTGAGATTATTGGAACCTTTGTCCTTGTTTACACCGTCTTCTCTGC 739
Query 672 CACTGACGCCAAGAGAAGCGCTCGTGACTCCCACGTGCCGATTTTGGCTCCACTCCCAAT 731
|||||| |||||||||| |||||||||||| || || || ||| | || || ||||| ||
Sbjct 740 CACTGATGCCAAGAGAAACGCTCGTGACTCTCATGTTCCTATTCTAGCACCGCTCCCTAT 799
Query 732 CGGATTCGCTGTGTTCTTGGTTCACTTGGCGACGATTCCGATAACCGGAACCGGAATCAA 791
||||||||||||||||||||||||||| || || || || || || ||||| ||||||||
Sbjct 800 CGGATTCGCTGTGTTCTTGGTTCACTTAGCAACCATCCCCATTACTGGAACTGGAATCAA 859
Query 792 CCCAGCAAGGAGTCTTGGAGCTGCAATCATCTACAACAAGGACCACGCTTGGGACGACCA 851
||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 860 CCCAGCAAGAAGTCTTGGAGCTGCAATCATCTTCAACAAGGACAACGCTTGGGATGACCA 919
Query 852 C-TG--GA-TATTCTGGGTAGGACCATTCATTGGAGCAGCTCTTGCGGCTCTTTACCACC 907
| || | | || ||||| |||||||||||||| || || ||||| ||||| ||||||
Sbjct 920 CGTGATGGGTCTTTTGGGTTGGACCATTCATTGGTGCTGCACTTGCTGCTCTCTACCACG 979
Query 908 A-ACTTGTCATCAGAGCCATTCCATTCAAGTCCAGAA 943
| | |||||||||||||| ||||||||||||||||
Sbjct 980 TTA-TAGTCATCAGAGCCATCCCATTCAAGTCCAGAA 1015
> AT4G23400.1 | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic
protein 1;5 | chr4:12220743-12222371 FORWARD LENGTH=1129
Length=1129
Score = 621 bits (336), Expect = 4e-177
Identities = 697/873 (80%), Gaps = 17/873 (2%)
Strand=Plus/Plus
Query 78 AGAGAGAGAGATGGAAGGGAAAGAAGAGGATGTTCGA-GTGGGAGCGAACAAGTTCCCAG 136
||||||| | |||||||| |||||||| || | || | || ||||| |||||||||||||
Sbjct 40 AGAGAGAAACATGGAAGGCAAAGAAGAAGACG-TCAATGTTGGAGCCAACAAGTTCCCAG 98
Query 137 AGAGGCAACCCATAGGGACGTCGGCTCAGAC-G-GA-CAAAGACTACAAGGAGCCACCAC 193
|||| || || || || ||| |||||||||| | || ||| ||||| ||||| |||||||
Sbjct 99 AGAGACAGCCGATCGGTACGGCGGCTCAGACGGAGAGCAAGGACTATAAGGAACCACCAC 158
Query 194 CAGCTCCACTGTTCGAGCCAGGCGAGCTGAGTTCATGGTCCTTCTACAGAGCCGGAATCG 253
| || || | ||||| || |||||||| | || ||||| ||||||||||| || || |
Sbjct 159 CGGCGCCGTTTTTCGAACCCGGCGAGCTCAAATCTTGGTCTTTCTACAGAGCAGGGATAG 218
Query 254 CCGAGTTCATAGCCACATTCCTGTTT-CTATACATCACAGTATTGACAGTGATGGGAGTG 312
| |||||||||||||| ||||| ||| || ||| |||| || |||||||| ||||| ||
Sbjct 219 CTGAGTTCATAGCCACTTTCCT-TTTCCTCTACGTCACCGTTTTGACAGTCATGGGTGTT 277
Query 313 AAGAGAGCACCAAACATGTGTGCCTCTGTTGGAATCCAAGGCATTGCTTGGGCTTTTGGA 372
|||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 278 AAGAGAGCTCCCAATATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTGGT 337
Query 373 GGCATGATCTTTGCCCTTGTCTACTGTACTGCTGGAATCTCTGGTGGACACATAAACCCA 432
|||||||||||||| ||||| |||||||||||||||||||| || ||||| || || ||
Sbjct 338 GGCATGATCTTTGCTCTTGTTTACTGTACTGCTGGAATCTCAGGAGGACATATTAATCCG 397
Query 433 GCGGTGACATTTGGTCTGTTCTTGGCTCGTAAACTGTCATTGACGAGAGCTGTCTTCTAC 492
|||||||| |||||| |||||||||| | || || || || || |||||| | ||||||
Sbjct 398 GCGGTGACTTTTGGTTTGTTCTTGGCGAGGAAGCTATCTTTAACCAGAGCTCTGTTCTAC 457
Query 493 ATCGTGATGCAATGTCTCGGAGCCATCTGCGGCGCCGGAGTTGTCAAAGGCTTCCAGCCA 552
|| || ||||| || || ||||| || || || || || || || ||||| || || |||
Sbjct 458 ATAGTAATGCAGTGCCTTGGAGCTATATGTGGTGCTGGTGTGGTTAAAGGGTTTCAACCA 517
Query 553 AATCCT-TACCAAACTC-TCGGCGGAGGAGCCAACACCGTCGCTCACGGCTACACTAAGG 610
| | ||||| || | ||||| ||||| || || ||||| || ||||| ||||
Sbjct 518 GGGC-TGTACCAGACGAAT-GGCGGTGGAGCTAATGTGGTGGCTCATGGTTACACAAAGG 575
Query 611 GCTCTGGT-TTGGGCGCTGAGATCATCGGAACCTTCGTCCTTGTCTACACGGTCTTCTCC 669
| || ||| |||| || ||||| | ||||| || || || || ||||| || |||||
Sbjct 576 GTTCAGGTCTTGGT-GCAGAGATTGTTGGAACTTTTGTTCTGGTTTACACTGTTTTCTCA 634
Query 670 GCCACTGACGCCAAGAGAAGCGCTC-GTGACTCCCACGTGCCGATTTTGGCTCCACTCCC 728
|| ||||| || |||||||| || | | ||||| || || || || |||||||| || ||
Sbjct 635 GCTACTGATGCTAAGAGAAGTGC-CAGAGACTCTCATGTCCCTATCTTGGCTCCGCTTCC 693
Query 729 AATCGGATTCGCTGTGTTCTTGGTTCACTTGGCGACGATTCCGATAACCGGAACCGGAAT 788
||| || || ||||| |||||||| |||||||| || || || || || ||||| || ||
Sbjct 694 AATTGGGTTTGCTGTCTTCTTGGTGCACTTGGCTACCATCCCAATTACTGGAACTGGCAT 753
Query 789 CAACCCAGCAAGGAGTCTTGGAGCTGCAATCATCTACAACAAGGACCACGCTTGGGACGA 848
||||| || |||||||| |||||||| ||||||||||||||||| || |||||||| ||
Sbjct 754 TAACCCGGCCAGGAGTCTCGGAGCTGCCATCATCTACAACAAGGATCATGCTTGGGATGA 813
Query 849 CCACTGGATATTCTGGGTAGGACCATTCATTGGAGCAGCTCTTGCGGCTCTTTACCACCA 908
||| ||||| |||||||| || ||||||||||| || || ||||| ||||| ||||| ||
Sbjct 814 CCATTGGATCTTCTGGGTCGGTCCATTCATTGGTGCTGCGCTTGCTGCTCTGTACCATCA 873
Query 909 -ACTTGTCATCAGAGCCATTCCATTCAAGTCCA 940
| | ||||||||||| ||||| ||||||||||
Sbjct 874 GA-TAGTCATCAGAGCTATTCCTTTCAAGTCCA 905
> AT2G16850.1 | Symbols: PIP3B, PIP2;8 | plasma membrane intrinsic
protein 2;8 | chr2:7301581-7303437 FORWARD LENGTH=1160
Length=1160
Score = 324 bits (175), Expect = 1e-87
Identities = 551/731 (75%), Gaps = 32/731 (4%)
Strand=Plus/Plus
Query 171 CAAAGACTACAAGGAGCCACCACCAGCTCCACTGTTCGAGCCA-GGC-GAGC-TGAGTTC 227
|||||||||| ||| ||||| |||||||||| ||| || || ||| |||| | || ||
Sbjct 102 CAAAGACTACGTGGATCCACCTCCAGCTCCAC--TTCTAGACATGGCTGAGCTTAAGCTC 159
Query 228 ATGGTCCTTCTACAGAGCCGGAATCGCCGAGTTCATAGCCACAT-TCCTGTTTCTATACA 286
||||| || |||||||| ||||| |||||||| ||||| | |||| || || ||
Sbjct 160 -TGGTCTTTTTACAGAGCTATCATCGCAGAGTTCATCGCCAC-TCTCCTCTTCCTCTATG 217
Query 287 TCACAGTA-TTGACAGTGATGGGAGTGAAGAGAGC--ACCAAACATGTGTGCCTCTGTTG 343
| || ||| | ||||| || || |||| | | ||| | | |||| | |||||
Sbjct 218 TAACCGTAGCT-ACAGTCATTGGCCACAAGA-ACCAAACCGGTCCT-TGTGGCGGTGTTG 274
Query 344 GAATCCAAGGCATTGCTTGGGCTTTTGGAGGCATGATCTTTGCCCTTGTCTACTGTACTG 403
| | | |||||||| ||||| ||||| ||||||||||||| ||| ||||| || || |
Sbjct 275 GTTTACTCGGCATTGCGTGGGCCTTTGGTGGCATGATCTTTGTCCTCGTCTATTGCACCG 334
Query 404 CTGGAATCTCTGGTGGACACATAAACCCAGCGGTGACATTTGGTCTGTTCTTGGCTCGTA 463
| || ||||| || || ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 335 CCGGTATCTCCGGAGGTCACATTAACCCAGCTGTGACATTTGGTCTGTTCTTGGCTCGTA 394
Query 464 AACTGTCATTGACGAGAGCTGTCTTCT-ACATCGTGA-TGCAATGTCTCGGAGCCATCTG 521
|| |||| | | ||||| || | || |||| ||| | || ||||| |||||||| ||
Sbjct 395 AAGTGTCGCTCCCTAGAGCAGT-TGCTTACATGGTGGCT-CAGTGTCTTGGAGCCATTTG 452
Query 522 CGGCGCCGGAGTTGTCAAAGGC-TTCCA-GCCAAATCCTTACCAAAC-TCTCGGCGGAGG 578
|| | ||| | || || ||| || | | | ||| || |||| |||||| || ||
Sbjct 453 TGGAGTTGGACTCGTTAA-GGCCTTT-ATGATGACTCCATAT-AAACGTCTCGGAGGCGG 509
Query 579 AGCCAACACCGTCGCTCACGGCTACA-CTAAGGGCTCTGGT-TTGGGCGCTGAGATCATC 636
||| |||||||| ||| | || || | | | || ||| | |||| |||||||| ||
Sbjct 510 AGCTAACACCGTAGCTGATGGTTATAGC-ACCGGAACTGCTCTTGGT-GCTGAGATTATT 567
Query 637 GGAACCTTCGTCCTTG-TCTACACGGTCTTCTCCGCCACTGACGCCAAGAGAAGCGCTCG 695
|| || || ||| ||| | ||||| |||||||||||||||||| |||| ||||| || ||
Sbjct 568 GGCACATTTGTC-TTGGTTTACACTGTCTTCTCCGCCACTGACCCCAAAAGAAGTGCCCG 626
Query 696 TGACTCCCACGTGCCGATTTTGGCTCCACTCCCAATCGGATTCGCTGTGTTCTTGGTTCA 755
|||||| ||||| ||| |||||||||| | || || || || ||||||||| |||| ||
Sbjct 627 TGACTCTCACGTCCCGGTTTTGGCTCCGTTACCTATAGGGTTTGCTGTGTTCATGGTGCA 686
Query 756 CTTGGCGACGATTCCGATAACCGGAACCGGAATCAACCCAGCAAGGAGTCTT-GGAGCTG 814
||||| || || || ||||| ||||| || || || ||||| || || ||| || ||||
Sbjct 687 TTTGGCTACTATCCCCATAACTGGAACTGGGATTAATCCAGCCAGAAG-CTTTGGTGCTG 745
Query 815 CAATCATCTACAACAAGGACCACGCTTGGGACGACCACTGGATATTCTGGGTAGGACCAT 874
| | ||||||||||| || | |||||||||||||| ||||| || ||||| |||||||
Sbjct 746 CTGTTATCTACAACAATGAGAAAGCTTGGGACGACCATTGGATCTTTTGGGTTGGACCAT 805
Query 875 TCATTGGAGCA 885
|| | ||||||
Sbjct 806 TCGTGGGAGCA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5