BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470119
Length=2275
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01580.1 | Symbols: FRO2, FRD1, ATFRO2 | ferric reduction ox... 3709 0.0
> AT1G01580.1 | Symbols: FRO2, FRD1, ATFRO2 | ferric reduction
oxidase 2 | chr1:209395-213041 FORWARD LENGTH=2409
Length=2409
Score = 3709 bits (2008), Expect = 0.0
Identities = 2191/2280 (96%), Gaps = 10/2280 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATC-ACCAAAAGCAATAACGGTAGTGGTTCGAACCTATCTGCAGGAGAAGAGTT 59
||||||||| | |||||||||||| | |||||||||||| ||||||||||||||| ||
Sbjct 1 ATGGAGATCGA-AAAAAGCAATAAC-G--GTGGTTCGAACCCATCTGCAGGAGAAGAATT 56
Query 60 TAAGGATATGATTAAGGGAGTGACTAAGTTCTTGATGATGGTGATTTTCCTTGGAACTAT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 57 TAAGGATATGATTAAGGGAGTGACTAAGTTCTTGATGATGGTGATTTTCCTTGGAACCAT 116
Query 120 CATGCTTTGGATCATGATGCCAACACTAACCTACCGAACCAAGTGGTTGCCACATATGCG 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 117 CATGCTTTGGATCATGATGCCAACACTAACCTATCGAACCAAGTGGTTGCCACATCTGCG 176
Query 180 TATCAAGTTTGGAACATCAACTTACTTTGGTGCCACAGGGACGACGCTTTTCATGTATAT 239
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 177 TATCAAGTTTGGAACATCCACTTATTTTGGTGCCACAGGGACGACGCTTTTCATGTATAT 236
Query 240 GTTCCCAATGATGGTCGTAGCTTGTTTGGGATGTGTCTATCTTCACTTCAAGAATCGAAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTTCCCAATGATGGTCGTAGCTTGTTTGGGATGTGTCTATCTTCACTTCAAGAATCGAAA 296
Query 300 GTCGTCAGACCATATCGATAGAGAGACGAAGGGAGGAGTGTGGAGTAAACTAAGAAAGCC 359
|||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTCGCCACACCATATCGATAGGGAGACGAAGGGAGGAGTGTGGAGTAAACTAAGAAAGCC 356
Query 360 AATGTTAGTGAAGGGACCATTAGGAATAGTCTCAGTGACTGAGATCACCTTCTTGGCGAT 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AATGTTAGTGAAGGGGCCATTAGGAATAGTCTCAGTGACTGAGATCACCTTCTTGGCGAT 416
Query 420 GTTTGTGGCTCTTCTTCTTTGGTGCTTTATCACTTATTTGCGCAATAGCTTCGCCACTAT 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTTTGTGGCTCTTCTTCTCTGGTGCTTTATCACTTATTTGCGCAATAGCTTCGCCACTAT 476
Query 480 CACTCCTAAATCAGCTGCCGCACATGACGAATCATTGTGGCAAGCGAAGCTGGAATCAGC 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 477 CACTCCTAAATCAGCTGCCGCACATGACGAATCTTTGTGGCAAGCGAAGCTGGAATCAGC 536
Query 540 GGCGCTAAGGTTAGGACTGATCGGAAACATATGTTTAGCGTTCTTGTTCTTACCGGTGGC 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 GGCGCTAAGGTTAGGACTGATCGGAAACATATGTTTGGCGTTCTTGTTCTTACCGGTGGC 596
Query 600 TCGTGGGTCATCGTTGCTACCGGCAATGGGATTAACCTCGGAGTCAAGCATCAAATACCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCGTGGGTCATCGTTGCTACCGGCAATGGGATTAACCTCGGAGTCAAGCATCAAATACCA 656
Query 660 TATTTGGCTCGGACACATGGTCATGGCCCTTTTCACGGTTCATGGTCTCTGTTACATCAT 719
||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 657 TATATGGCTCGGCCACATGGTCATGGCCCTTTTCACCGTTCATGGTCTTTGTTACATAAT 716
Query 720 TTACTGGGCCTCTATGCATGAAATCTCCCAGATGATCATGTGGGATACGAAAGGTGTCTC 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTACTGGGCCTCAATGCATGAAATCTCCCAGATGATCATGTGGGATACGAAAGGTGTCTC 776
Query 780 GAATTTGGCCGGAGAAATAGCACTGGTGGCTGGACTTATGATGTGGGCCACCACATATCC 839
|||||||||||||| ||||| |||| ||| |||||| ||||||||||||||||||||||
Sbjct 777 AAATTTGGCCGGAGAGATAGCTCTGGCGGCCGGACTTGTGATGTGGGCCACCACATATCC 836
Query 840 GAAGATAAGGAGGAGATTCTTCGAAGTCTTCTTCTACACTCACTATCTCTACATCGTCTT 899
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAAGATAAGGAGAAGATTCTTCGAAGTCTTCTTCTACACTCACTATCTCTACATCGTCTT 896
Query 900 CATGCTCTTCTTCGTCCTCCACGTCGGCATAACCTTCTCCTTCATCGCTCTCCCTGGTTT 959
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 CATGCTCTTCTTTGTCCTCCACGTCGGCATAAGTTTCTCCTTCATCGCTCTCCCTGGTTT 956
Query 960 CTACATCTTCTTAGTCGATCGTTTCCTTAGGTTTCTTCAGTCACGTGAAAATGTTCGCTT 1019
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 957 CTACATCTTCTTAGTCGATCGTTTCCTTCGGTTTCTTCAGTCACGTGAAAATGTTCGCTT 1016
Query 1020 GCTCTCTGCTCGGGTTCTTCCTTCCGACACTATGGAGCTCACTTTCTCCAAAAACTCTAA 1079
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GCTCGCTGCTCGGATTCTTCCTTCCGACACTATGGAGCTCACTTTCTCCAAAAACTCTAA 1076
Query 1080 GTTGGTGTATAGCCCGACGAGCATAATGTTTGTGAACATACCGAGCATTTCAAAGCTGCA 1139
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTTGGTTTATAGCCCGACGAGCATAATGTTTGTGAACATACCGAGCATTTCAAAGCTGCA 1136
Query 1140 ATGGCATCCATTTACGATAACGTCGAGTAGCAAACTCGAACCAGAGAAGCTAAGTGTTGT 1199
||||||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 1137 ATGGCATCCGTTTACGATAACTTCCAGTAGCAAACTCGAACCAGAGAAGCTAAGTATTGT 1196
Query 1200 CATCAAGAAAGAAGGCAAATGGTCAACTAAGCTTCACCAGAGGCTTTCTTCTTCTGATCA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TATCAAGAAAGAAGGCAAATGGTCAACTAAGCTTCACCAGAGGCTTTCTTCTTCTGATCA 1256
Query 1260 GATCGACCGACTTGCTGTTTCTGTAGAAGGTCCTTACGGCCCTGCTTCCACCGATTTCTT 1319
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1257 GATCGACCGACTTGCTGTTTCTGTAGAAGGTCCTTACGGCCCTGCTTCCGCCGATTTCTT 1316
Query 1320 AAGGCATGAAGCTTTGGTTATGGTGTGTGGGGGAAGCGGGATAACTCCCTTTATCTCTGT 1379
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1317 AAGGCATGAAGCTTTGGTTATGGTGTGCGGAGGAAGCGGGATAACTCCGTTTATCTCTGT 1376
Query 1380 TATTCGTGATTTGATCGCCACAATCCAAAAAGAAACATGCAAAATCCCCAAAATTACTCT 1439
||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||
Sbjct 1377 TATTCGTGATTTGATCGCCACAAGCCAAAAGGAAACATGCAAAATCCCAAAAATAACTCT 1436
Query 1440 GATTTGTGCGTTTAAGAAGTCTTCAGAGATCTCCATGCTCGATCTTGTCTTGCCATTATC 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CATTTGTGCGTTTAAGAAGTCTTCAGAGATCTCCATGCTCGATCTTGTCTTGCCATTATC 1496
Query 1500 CGGTCTCGAGACTGAACTATCCTCCAACATAAACATCAAAATCGAAGCCTTCATAACCCG 1559
|||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1497 CGGTCTTGAGACTGAACTATCCTCCGACATTAACATCAAAATCGAAGCCTTCATAACCCG 1556
Query 1560 AGAGAAAGAAGCAGGAG-TCGAAGCAACAGCTGGGAAAATCAAAACTCTCTGGTTCAAAC 1618
||| || || ||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1557 AGATAATGATGCAGGAGAT-GAAGCAAAAGCTGGGAAAATCAAAACTCTCTGGTTCAAAC 1615
Query 1619 CAAGTCTTTCAGACCAATCCATCTCATCAATCCTCGGACCAAACTCAAGGCTTTGGCTCG 1678
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1616 CAAGTCTTTCAGACCAATCCATCTCATCAATCCTCGGACCAAACTCATGGCTTTGGCTCG 1675
Query 1679 GTGCAATTCTCGCATCTTCGTTCTTGATCTTCATGATAATTATTGGTATCATCAGTAGGT 1738
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1676 GTGCAATTCTCGCATCTTCGTTCTTGATCTTCATGATAATTATTGGTATCATCACTAGGT 1735
Query 1739 ATTACATTTACCCGATCGACCACAACACCAACAAGATCTATTCATTGACTTCAAAGACCA 1798
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1736 ATTACATTTACCCGATCGACCACAACACCAACAAGATCTATTCTTTGACTTCAAAAACCA 1795
Query 1799 TCATATATATCTTAGTCATCTCCGTGAGTATCATGGCGACTTCTAGTGCGGCTATGTTAT 1858
||||||||||||| |||||||||||||| || |||||||||| ||||||||||||||| |
Sbjct 1796 TCATATATATCTTGGTCATCTCCGTGAGCATAATGGCGACTTGTAGTGCGGCTATGTTGT 1855
Query 1859 GGAACAAGAAGAAGTACGGTAAAGTTGAAAGTAAACAGGTCCAAAACGTCGACCGTCCAT 1918
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GGAACAAGAAGAAGTATGGTAAAGTTGAAAGTAAACAGGTCCAAAACGTCGACCGTCCAT 1915
Query 1919 CTCCAACATCTTCTCCTACCTCAT---GGGGTTACAATTCCTTGAGAGAAATTGAAAGTA 1975
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1916 CTCCAACATCTTCTCCTACCTCATCATGGGGTTACAATTCCTTGAGAGAAATCGAAAGTA 1975
Query 1976 CGCCACAAGAATCGCTCGTGCAACGCACCAACCTGCATTTCGGAGAAAGACCTAATCTCA 2035
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1976 CGCCACAAGAATCGCTCGTGCAACGCACCAATCTGCATTTTGGAGAAAGACCTAATCTCA 2035
Query 2036 AGAAACTTCTACTTGATGTGGAAGGTTCGAGTGTGGGAGTTCTTGTGTGTGGTCCCAAGA 2095
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2036 AGAAACTTCTACTTGATGTGGAAGGTTCGAGTGTGGGAGTTCTTGTTTGTGGTCCTAAGA 2095
Query 2096 AGATGAGACAAAAGGTTGCGGAAATATGTTCCTCTGGTTTGGCTGAGAATCTTCATTTTG 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 AGATGAGACAAAAGGTTGCGGAAATATGTTCCTCTGGTTTGGCTGAGAATCTTCATTTTG 2155
Query 2156 AATCTATCAGTTTCAGCTGGTGATTGCGTATACAACTCTGTTTTTACTATGTGTTATGGG 2215
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 2156 AATCTATCAGTTTCAGCTGGTGATTGCGTATATAACTCTGTTTTCACTATGTGTTGTGCA 2215
Query 2216 ATTTGCTTCAGTTGCAAGTTAATAAGGTGGGCCTGTGATTTGACCTATCTTTTTGTGCTT 2275
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2216 ATTTGCTTGAGTTGCAAGTTAATAAGGTGGCCCTGTGATTTGACCTATCTTTGTGTGCTT 2275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112901025705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5