BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470137
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01430.1 | Symbols: TBL25 | TRICHOME BIREFRINGENCE-LIKE 25 |... 2263 0.0
> AT1G01430.1 | Symbols: TBL25 | TRICHOME BIREFRINGENCE-LIKE 25
| chr1:156801-158655 REVERSE LENGTH=1642
Length=1642
Score = 2263 bits (1225), Expect = 0.0
Identities = 1509/1638 (92%), Gaps = 51/1638 (3%)
Strand=Plus/Plus
Query 1 ATGGTGAAGTTCCTCGCTTTCAACGCCGACCAAAAACCTCCAGAAAGCTAATTA--GAAA 58
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 18 ATGATGAAGTTCCTCGCTTTCAACGCCAACCAAAAACCTCCAGAAAGCTAATTAGGGAAA 77
Query 59 GATTTaaaaaaaCTCACTGATCTGTTCTTCTCTCTAATTTCAATGGATTCGTTGAGATTA 118
|||| |||||||||| ||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 78 CATTTGAAAAAACTCAGTGATCTGCTCTTCTCTCTAATTGCAATGGATTCATTGAGATTA 137
Query 119 ATATCTAAGAGCATCAAGATTGAAGGAAACCCATTTGGTTCCTCTCACCAACGCAATCAA 178
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 138 ATATCTAAGAGCATCAAGATTGAAGGAACCCCATTTGGTTCCTCTCACCAACGCAATCAA 197
Query 179 ATTTTCCTCAAATCCGTCGCTTTCTTCCTTTTGATCGGTCTCGCTTACCGTTTTATCGTC 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 198 ATTTTCCTCAAATCCGTCGCTTTCTTCCTTTTGATCGGTCTCGCTTACCGTTTTCTCATC 257
Query 239 ACTGATTCCACCGTCTCTCCGGTTACCAACGTTCAAACCTTGCC-G---C-CT---G-CG 289
||| |||||||||||||||||||| ||| ||||| | ||| ||| | | || | ||
Sbjct 258 ACTAATTCCACCGTCTCTCCGGTTCCCACCGTTCGATCCTCGCCGGAATCTCTCCCGCCG 317
Query 290 GATCCTTCTGGTCTCA----CA--GCTCAAGC--C-TCC-CT-T-GATTCCCCAGGAAAC 337
|||||||| ||||||| || ||||| | | || || | |||||||||| ||||
Sbjct 318 GATCCTTCAGGTCTCACTGCCATCACTCAAACTTCAGCCTCTGTCGATTCCCCAGCAAAC 377
Query 338 ATCACAACCATTATTCCTTCACAAAATGTTTCAACCAAGTGTGATATCTTTATCGGGAAT 397
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 378 ATCACAACC---ATTGCTTCACAGAATGTTTCAACCAAGTGTGATATCTTTATCGGGAAT 434
Query 398 TGGGTACCAGACCCATCAGGTCCCGTCTACACCAATGTCTCTTGCCGTCATATCCAAGAT 457
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 435 TGGGTACCAGACCCATCAGGGCCAATCTACACCAATGTCTCTTGCCGTCATATCCAAGAT 494
Query 458 TACCAGAATTGCTTGAAAAACGGACGGCCAGATGTGAATTACCTTCAATGGAGATGGCAA 517
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 495 TACCAAAATTGCTTGAAAAACGGAAGGCCAGATGTGAATTACCTTCGATGGAGATGGCAA 554
Query 518 CCTCGCGATTGCGATCTCCCGAGGTTTGATCCTGAGCAATTTCTTGACAATATGAGGAAC 577
||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 555 CCTCGCGATTGCGATCTCCCGAGGTTTAACCCTGAGCAATTCCTTGACAATATGAGGAAC 614
Query 578 AAATGGTTGGCTTTTATCGGTGATTCCATCTCTCGTAACCATGTCCAATCCCTCATCTGC 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 615 AAATGGTTGGCTTTTATCGGTGATTCCATCTCTCGTAACCATGTCCAATCCCTCCTCTGC 674
Query 638 ATTCTCTCTCAGGTAGAAGAAGTAGAAGATATCTACCATGACAAGGAATACAAATCCAA- 696
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 675 ATTCTCTCTCAGGTAGAAGAAGTAGAAGATATCTTCCATGACAAGGAATACAAAT-CAAG 733
Query 697 GATTTGGAGATTCCCTTCTTACAACTTCACACTCTCTGTCATTTGGTCTCCTTTCCTTCT 756
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 734 GATCTGGAGATTCCCTTCTTACAACTTCACACTCTCTGTCATTTGGTCTCCTTTCCTTGT 793
Query 757 ACAAA-CTGAAACCTTTGAGAAC-AACG-TCAACGGAGT-TGACATTCAACTACACCTCG 812
| ||| ||||||||||||||||| | | || | | ||||||| | |||||||||
Sbjct 794 A-AAAGCTGAAACCTTTGAGAACGGA-GTTC--CTTTCTCAGACATTCGAGTACACCTCG 849
Query 813 ACAAGTTAGACCAAAAATGGACAGATCAGTACATCAATTTCGACTATGTCATCATCTCCG 872
||||| ||||||| |||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 850 ACAAGCTAGACCAGAAATGGACTGATCAGTACATCAATTTCGACTACGTTGTCATCTCCG 909
Query 873 GTGGAAAATGGTTCCTCAAAACAACAATCTTCCATGAAAACAACACTGTAACCGGATGCC 932
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 910 GTGGAAAATGGTTCCTCAAAACAACAATCTTCCATGAAAACAACACCGTAACCGGATGCC 969
Query 933 ATTACTGCCAAGGGAAGAACAATCTGACCGAACTCGGTTATCTCTACTCGTACCGAAAGG 992
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 970 ATTACTGCCAAGGGAAGAACAATATGACCGAACTCGGTTATCTATACTCGTACCGAAAGG 1029
Query 993 CTCTTCGTTTGGTTTTAGACTTTGTCGCTGAACCAAACCATAAAGCTCATGTTCTGTTCA 1052
||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1030 TTCTTCATTTGGTTTTAGACTTTGTCGCTGAACCGAACCATAAAGCTCAGGTTCTCTTCA 1089
Query 1053 GAACAACAACACCTGATCATTTCGAGAATGGAGAGTGGGACTCTGGTGGTTTCTGTAACC 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GAACAACAACACCTGATCATTTCGAGAATGGAGAGTGGGACTCTGGTGGTTTCTGTAACC 1149
Query 1113 GAACAATGCCGTTTACAGAAAGCAACGAAGGAAAGATGAAGAGCGAGGATGTATCGATGC 1172
|||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 1150 GAACAATGCCGTTTACGGAAGGCAGCGAAGGAGAGATGAAGAGCGAGGATGTATCGATGC 1209
Query 1173 GTGATATCGAGCTTGAAGAGTTCTATAAGACTACTA--A-ACAA---GAAGGTTCCAATT 1226
|||||||||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 1210 GTGATATCGAGCTTGAAGAGTTCTATAAGACTACTACTACACAACAAGAAGGTTCCAATT 1269
Query 1227 CAAACATTAG-ATTACTTGACACAACTTCAATGTCGCTTCTCCGACCAGATGGACATCCG 1285
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CAAACATT-GTATTACTTGACACAACTTCAATGTCGCTTCTCCGACCAGATGGACATCCG 1328
Query 1286 GGACCGTACCGGTATCCGAATCCTTTCGCTGGGGTGAAGAACAAGGAGCTGAATCAGGTT 1345
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1329 GGACCGTACCGGTATCCAAATCCTTTCGCTGGGCTGAAGAACAAGGAGCTGAATCAGGTT 1388
Query 1346 CAGAACGATTGTCTTCACTGGTGCTTACCCGGTCCGATTGATTCATGGAATGATCTAATG 1405
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 CAGAACGATTGTCTTCATTGGTGCTTACCCGGTCCGATTGATTCATGGAATGATCTAATG 1448
Query 1406 GTGGAGGTGATGCTTAACCGGGAACGGCAAAGACGAGAATAGCCTC--GAATTCATG-GA 1462
|| ||||||||||||||||||||||||||||||||||||||||||| || |||| | |
Sbjct 1449 GTCGAGGTGATGCTTAACCGGGAACGGCAAAGACGAGAATAGCCTCTCGACTTCACGTGC 1508
Query 1463 TATTAATGTTTTCTAATTAGTTTGTTTGCTTTGCCCGTAAAAAAGCCCATTTATTATTGG 1522
| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1509 TGTT---GTTTTCTAATTAGTTTGTTTG-TTTGCTCGTAAAAAAGCCCATTTATTATTGG 1564
Query 1523 ACCTTCCGTGGGTCTAAATACAACCACTGTCGTTTTTTGATGTGGGAACAAAACGTCGCG 1582
|||||||||||||| |||||||| |||||||||||||||||||||||| ||||| || |
Sbjct 1565 ACCTTCCGTGGGTCCAAATACAAGCACTGTCGTTTTTTGATGTGGGAATGAAACGCCGTG 1624
Query 1583 TCGTTTTACTTCCTCAGC 1600
||||||||||||||||||
Sbjct 1625 TCGTTTTACTTCCTCAGC 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79015657830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5