BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470139
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01410.1 | Symbols: APUM22, PUM22 | pumilio 22 | chr1:153113... 1048 0.0
> AT1G01410.1 | Symbols: APUM22, PUM22 | pumilio 22 | chr1:153113-154198
FORWARD LENGTH=1086
Length=1086
Score = 1048 bits (567), Expect = 0.0
Identities = 677/732 (92%), Gaps = 0/732 (0%)
Strand=Plus/Plus
Query 325 GATGATGATCAGCTCCATAAGCTTGCCTCGAAGCTTATGTTAGATTCTGATCTCTTTTTC 384
|||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 355 GATGTTGATAAGCTCCATAAGCTTGCCTCGAAGCTAATGTTAGATTCTGATCTCTTTTTC 414
Query 385 GAGTTTGTCACAACAAGACGAGGCTCGCTCATGATTCAGATTATCCTAGGAAAATCCGAA 444
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 GAGTTTGTCATAACAAGACGAGGCTCGCTCATGATTCAAATTATCCTAGGAAAATCCGAA 474
Query 445 GAAATCGACAAAGTTCTTTTGGCAGCAGTGAAGCAAAGGTTCATCGATGTCACAACCGAC 504
||| ||||| ||||| ||||||| | |||||||||||||||||||||||| ||||| ||
Sbjct 475 GAAGTCGACCAAGTTATTTTGGCGGGAGTGAAGCAAAGGTTCATCGATGTTACAACAAAC 534
Query 505 TTTTACGGTTATCGCATCATGATACGAACCATAAACGCTTTCAAGAAAAGAGGTGATTTG 564
|||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 535 TTTTACGGGTATCGCATCATGATACAAACCATAAAAGTTTTCAAGAAAAGAGGTGATTTG 594
Query 565 AAAGTGTATGATCAAATCCTACGCCTAATAGGAGTCCACGCACTCTACCTAACAAAGGAC 624
|||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 595 AAAGTGTACGACCAAATCCTACGCCTAATCGGAGTCCACGCTCTCTACCTAACAAAGGAC 654
Query 625 CTTGATGTGGGAAACTCCACGGTTCAACGGGCCATTAATCTACACCACCAAGATTGTACG 684
| |||| |||||||| ||| |||||| || ||||||||||||||||| |||||||||
Sbjct 655 CCTGATATGGGAAACAAGACGTTTCAACACGCTATTAATCTACACCACCAGGATTGTACG 714
Query 685 ACATTCATCGCGTGTGGGCTTCAATGTCACTACATAGAGCTTTCGTTTCTGAAACATGGA 744
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 715 ACATTCATCGCGTGTGGGCTTCAAAGCCACTACATTGAGCTTTCGTTTCTGAAACATGGA 774
Query 745 AGCAAAATTGTGGAGATGCTTATCGATGACCGTATTTCGATGGTGCCTTTGGTTCTAATC 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 775 AGCAAAATTGTGGAGATGCTTATCGATGACCGTATTTCGATGGTGCCTTTGGTTCTACTC 834
Query 805 ATGATAGAGATTGTCAAATGTGATGAAGATACGTTGGTGAGATTGGCTAATAATGAATAT 864
||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 835 ATGATGGAGATTGTCAAGTGTGATGAAGATACGTTGGTGAGATTGGCTACTGATGAATAT 894
Query 865 GGAAATAACATTTTGAAAAAGACTCTGGAACTTGCGAAAGAGCATAGGGCTGATTTCTTT 924
|| |||||||||||||||||| ||||| |||||| |||||||||| || |||||||||
Sbjct 895 GGGAATAACATTTTGAAAAAGTTTCTGGCACTTGCCAAAGAGCATAAGGAAGATTTCTTT 954
Query 925 GGTGATCTTGTTGACAAGCTGAATCCTTTACTTGATAGCTTGCGCGGGTCTCTCGGAGAA 984
|||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 955 GGTGATCTTGTTGACAAGTTGAATCCTTTACTCGATAGTTTGCGCGGGACTCTCGGAGAA 1014
Query 985 AACATTGTAGCTATCATCGACTCAGAGACAGAGACGGTGAAGGATCGAATTGTTTCACAA 1044
||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 1015 AACATTGTAGCAATCATCGACTCAGAAACAGAGATGGTTAAGGATCGAATTGTTTCACAA 1074
Query 1045 GGAAATAATTAG 1056
||||||||||||
Sbjct 1075 GGAAATAATTAG 1086
Score = 558 bits (302), Expect = 3e-158
Identities = 320/329 (97%), Gaps = 0/329 (0%)
Strand=Plus/Plus
Query 1 ATGACTCATGAACGCGGCTATGATTTGGCGTCACAAGTACTAAACGTTTGCAACGTACAT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGACTCATGAACGCGGCTATGATTTGGCGTCACAAGTACTAAACATTTGCAACGTACAT 60
Query 61 CACAAGAAACTCTTTTGCCATATCACGTACCGTCACTTGTTGGTCTTGTCGAGTGACGAA 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACAAGAAACTGTTTTGCCATATCACGTACCGTCACTTGTTGGTCTTGTCGAGTGACGAT 120
Query 121 AACGGTTGCATCGTACTCAAGAAAGTTATAACAATAGCTGATGATTTCTGGAAAGATGAA 180
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 AACGGTTGCGTCATACTCAAGAAAGTTATAACAATAGCTGATGATTTCTTGAAAGATGAA 180
Query 181 TTCCTTGACCTAATCGCACAGCACGCTCACTCGCTAAGCATGCACGACTTAGGAATCTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCTTGACCTAATCGCACAGCACGCTCACTCGCTAAGCATGCACGACTTAGGAATCTCC 240
Query 241 CTAATCCAACACGTGCTTGAGCTTGATTTTACAAAGAAAACCACACAAGACGACGCGCGC 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 CTAATCCAGCACGTGCTTGAGCTTGATTTTACAAAGAAAACCACACAAGACGACAAGCGC 300
Query 301 TTGCACGAGCTAATGGCTGAGTTTGATGA 329
|||||||||||||||||||||||||||||
Sbjct 301 TTGCACGAGCTAATGGCTGAGTTTGATGA 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5