BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470141
Length=2342
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01340.2 | Symbols: CNGC10 | cyclic nucleotide gated channel... 3465 0.0
AT4G01010.1 | Symbols: ATCNGC13, CNGC13 | cyclic nucleotide-gat... 1631 0.0
> AT1G01340.2 | Symbols: CNGC10 | cyclic nucleotide gated channel
10 | chr1:132330-135831 REVERSE LENGTH=2397
Length=2397
Score = 3465 bits (1876), Expect = 0.0
Identities = 2061/2151 (96%), Gaps = 10/2151 (0%)
Strand=Plus/Plus
Query 195 AGGTTCAAAGATGAAGACAGATCATTATCCTCTGAGTATGGTTATGGAAGAAAAGCTAGA 254
|||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||
Sbjct 205 AGGTTCAAAGATGAAGGCAAACCATTATCCTCTGAATATGGTTATGGAAGAAAAGCTAGA 264
Query 255 CCTTCTTTAGACAGAGTTTTCAAGAATGTAAAGTGGGGATTCAAGAAGCCATTAAATTTC 314
||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 265 CCTTCTTTAGATAGAGTTTTCAAGAATGTAAAATGGGGATTCAAGAAGCCATTGAGTTTC 324
Query 315 CGTTCACATAAGGATCCTGACCACAAGGAAACATCTAGTATTACTCGGAAGAACATCATA 374
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 325 CCTTCACATAAGGATCCTGACCACAAGGAAACATCTAGTGTTACTCGGAAGAACATCATA 384
Query 375 AACCCGCAGGATTCGTTTCTCCAGAATTGGAACAAAATATTTCTCTTTGCTTGTGTGGTT 434
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 385 AACCCGCAGGATTCGTTTCTCCAGAACTGGAACAAAATATTTTTATTTGCTTGTGTGGTT 444
Query 435 GCTTTGGCGATTGATCCATTGTTTTTCTACATTCCCATTGTCGATGGCGCAAGGCACTGT 494
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 445 GCTTTGGCGATTGATCCATTGTTTTTCTACATTCCCATTGTCGATAGCGCAAGGCACTGT 504
Query 495 CTTACTTTGGACAAAAAGTTGGAGATAGCTGCAAGTTTTCTTCGGACACTCATCGATGCC 554
|||||||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct 505 CTTACTTTGGACTCAAAGTTGGAGATAGCTGCGAGTTTGCTTCGTACGCTCATCGATGCC 564
Query 555 TTTTACATTATTCACATTGTGTTTCAGTTCAGGACAGCTTACATCGCTCCTTCTTCGCGG 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TTTTACATTATTCACATTGTGTTTCAGTTCAGGACAGCTTACATCGCTCCTTCTTCGCGG 624
Query 615 GTTTTTGGAAGAGGTGAATTGGTAGATGATGCTAAGGCTATAG-CTATAAAGTATCTCTC 673
|||||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||
Sbjct 625 GTTTTTGGAAGAGGTGAACTGGTAGATGATGCTAAGGCAATAGCCT-TAAAGTATCTCTC 683
Query 674 ATCTTACTTCATCATTGATGTACTCTCTATCCTTCCTCTCCCACAGATAGTAGTTTTAGC 733
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TTCTTACTTCATCATTGATCTACTCTCTATCCTTCCTCTCCCACAGATAGTAGTTTTAGC 743
Query 734 CGTTATTCAAAGCGTCAACCAGCCAGTCTCTTTGTTCACAAAAGACTACCTTAAATATGT 793
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| | |
Sbjct 744 CGTTATTCCAAGCGTCAACCAGCCAGTCTCTTTGCTAACAAAAGACTACCTTAAAT-TTT 802
Query 794 -CATAATTGCTCAATATGTTCCTCGGATTCTCCGTATGTATCCGCTTTACACCGAAGTGA 852
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 803 CCATAATTGCTCAATATGTTCCTCGGATTCTCCGTATGTATCCGCTTTACACTGAAGTGA 862
Query 853 CCAGAACATCTGGCATTGTTACTGAAACAGCAAGGGCTGGAGCTGCTTGGAACCTCTCTC 912
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 863 CAAGAACATCTGGCATTGTTACTGAAACAGCATGGGCTGGAGCTGCTTGGAACCTCTCTC 922
Query 913 TCTATATGTTAGCCAGTCATGTATTTGGAGCTTTATGGTACTTAATCTCAGTAGAACGAG 972
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 923 TCTATATGTTAGCCAGTCATGTGTTTGGAGCTTTATGGTACTTAATCTCAGTAGAACGAG 982
Query 973 AAGACAGATGCTGGCAAGAGGCATGCGAGAAGACAAAAGGTTGTGATAAGAAATTTCTCT 1032
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 983 AAGACAGATGCTGGCAAGAGGCATGCGAGAAGACAAAAGGTTGTAATATGAAATTCCTCT 1042
Query 1033 ACTGTGAAAACGATCG-CACTGTTAGCAACAATTTCCTGACCACTTCTTGCCCATTTATC 1091
|||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1043 ACTGTGAAAACGATCGTAAC-GTTAGCAACAATTTCCTGACCACTTCTTGCCCATTTCTC 1101
Query 1092 GACCCTGGTGATATAACAAACTCAACCATCTTCAACTTTGGCATCTTCACTGATGCTCTT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GACCCTGGTGATATAACAAACTCAACCATCTTCAACTTTGGCATCTTCACTGATGCTCTT 1161
Query 1152 AAGAGTGGGGTCGTTGAATCACATGATTTCTGGAAGAAATTCTTCTACTGCTTCTGGTGG 1211
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AAGAGTGGCGTTGTTGAATCACATGATTTCTGGAAGAAATTCTTCTACTGCTTCTGGTGG 1221
Query 1212 GGTCTGCGAAATCTGAGTGCATTGGGACAGAATCTCCAAACAAGCAAATTCGTTGGTGAA 1271
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1222 GGTCTTCGAAATCTGAGTGCATTGGGACAGAATCTCCAAACTAGCAAATTCGTTGGTGAA 1281
Query 1272 ATCATATTTGCTATATCAATCTGCATATCTGGACTAGTCTTATTTGCGCTACTTATCGGC 1331
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1282 ATCATATTTGCTATATCAATCTGCATATCTGGACTAGTCTTATTTGCTCTACTTATCGGC 1341
Query 1332 AATATGCAGAAATACTTGGAATCAACAACAGTTCGAGAGGAGGAAATGAGAGTGAGAAAG 1391
|||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1342 AATATGCAGAAATATTTGGAGTCAACAACAGTTCGAGAAGAGGAAATGAGGGTGAGAAAG 1401
Query 1392 AGAGATGCAGAGCAGTGGATGTCTCATAGAATGTTACCTGAAGACCTGAGGAAACGTATC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 AGAGATGCAGAGCAGTGGATGTCTCATAGAATGTTACCTGAAGACCTGAGGAAACGTATC 1461
Query 1452 AGAAGATATGAACAATATAGATGGCAAGAGACAAGAGGAGTCGAAGAAGAAACCCTTCTT 1511
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1462 AGAAGATATGAACAATATAGATGGCAAGAGACAAGAGGAGTTGAAGAAGAAACCCTTCTT 1521
Query 1512 CGTAACCTCCCTAAAGACCTTAGAAGAGACATTAAACGCCATCTCTGCCTTGATCTCCTC 1571
|||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct 1522 CGTAACCTCCCTAAAGACCTCAGAAGAGATATTAAACGCCATCTTTGCCTCGATCTCCTC 1581
Query 1572 AAGAAAGTACCTTTGTTTGAGATAATGGACGAACAGTTACTTGACGCGGTTTGCGATAGG 1631
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1582 AAGAAAGTACCTTTGTTTGAGATAATGGATGAGCAGTTACTTGACGCGGTTTGCGATAGG 1641
Query 1632 CTAAAACCTGTGCTCTACACAGAGAACAGTTACGTGATCCGTGAAGGAGATCCTGTTGGA 1691
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1642 CTAAGACCTGTGCTCTACACCGAGAACAGTTACGTGATCCGTGAAGGAGATCCTGTTGGG 1701
Query 1692 GAAATGCTGTTTGTGATGAGAGGAAGACTCGTAAGTGCCACCACTAATGGAGGAAGAAGT 1751
|||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1702 GAAATGTTGTTTGTTATGAGAGGAAGACTGGTAAGTGCCACCACTAATGGAGGAAGAAGT 1761
Query 1752 GGGTTCTTCAATGCCGTGAACCTAAAGGCAAGTGATTTCTGCGGAGAAGATCTTCTCCCG 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 GGGTTCTTCAATGCCGTGAACCTAAAGGCAAGTGATTTCTGCGGAGAAGATCTTCTCCCG 1821
Query 1812 TGGGCATTAGATCCTCAATCTTCTTCTCACTTTCCTATCTCGACAAGAACAGTTCAAGCT 1871
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1822 TGGGCATTAGATCCTCAATCTTCTTCTCACTTTCCCATCTCGACAAGAACAGTTCAAGCT 1881
Query 1872 CTCACCGAAGTCGAAGCCTTTGCTCTTACAGCTGAGGATCTCAAGTCTGTCGCTTCACAA 1931
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1882 CTCACTGAAGTCGAAGCCTTTGCTCTCACAGCTGAGGATCTCAAGTCTGTCGCTTCACAA 1941
Query 1932 TTCAGACGCCTCCATAGCAAGCAGCTCCAACATACTTT-CAGGTTTTATTCAGTGCAATG 1990
||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||
Sbjct 1942 TTCAGACGCCTCCATAGCAAGCAACTCCAACATACTTTTC-GGTTTTACTCAGTGCAATG 2000
Query 1991 GAGAACATGGAGCGTATCTTTTATACAAGCAGCGTGGCGGAGATACTGTCGGAGGAAGTT 2050
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2001 GAGAACATGGAGCGTGTCTTTTATACAAGCAGCGTGGAGGAGATACTGTCGGAGGAAGTT 2060
Query 2051 AGCAAAGTCATTACGCGATGAAGAAGAGCGTCTCCGAGAAGCGCTGGCTAATCAAGATAA 2110
||| |||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 2061 AGCCAAGTCACTACGCGATGAAGAAGATCGTCTCCGAGAAGCGCTCGCTAGTCAAGATAA 2120
Query 2111 AGAACGCAATGCTGCAACCGTGTCTTCGTCCTTGAGCCTTGGAGGTGCTCTTTACGCGTC 2170
||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2121 AGAACACAATGCTGCAACCGTGTCGTCGTCCTTGAGCCTTGGAGGCGCTCTTTACGCGTC 2180
Query 2171 GCGTTTCGCTTCAAACGCGCTTCACAATCTGAGGCACAATATATCCAACCTTCCTCCCCG 2230
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2181 GCGTTTCGCATCAAACGCGCTTCACAATCTGAGGCACAATATCTCCAACCTTCCTCCTCG 2240
Query 2231 CTACACTCTTCCTTTGCTACCTCAAAAACCCACCGAGCCTGACTTCACCGCCAATCACAC 2290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2241 CTACACTCTTCCTTTGCTACCTCAAAAACCCACCGAGCCTGACTTCACCGCCAATCATAC 2300
Query 2291 AACTGACCCTTAGATCTCT-TA-CATGTGTATAGTGTGTGGAATACAGTGT 2339
||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 2301 AACTGACCCTTAGATCTCTCTTGCATGTGTATAGTGTGTGGAATAAAGTGT 2351
Score = 137 bits (74), Expect = 4e-31
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 53 AGGATTCGTCACACTGTAAGCGAAAGATCAGTTGAAATATACAA-GGTTTGGCTGATGGC 111
|||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 123 AGGACTCGTCACCCTGTAAGCGAAAGATCAGTTGAAATATACAAGGGTTTGGCTGATGGC 182
Query 112 ATTTAGCCATGATAATCGTCTAAGGTT 138
||||||||||||||||||| |||||||
Sbjct 183 ATTTAGCCATGATAATCGTGTAAGGTT 209
> AT4G01010.1 | Symbols: ATCNGC13, CNGC13 | cyclic nucleotide-gated
channel 13 | chr4:434569-437242 REVERSE LENGTH=2091
Length=2091
Score = 1631 bits (883), Expect = 0.0
Identities = 1649/2011 (82%), Gaps = 83/2011 (4%)
Strand=Plus/Plus
Query 228 GAGTATGGTTATGGAAG--A-AAAGCTAGACCTTCTTTAGACAGAGTTTTCAAGAATGTA 284
||||||||||| ||||| | ||||||||||| ||| || ||| |||||| ||||||||
Sbjct 58 GAGTATGGTTACGGAAGAAATAAAGCTAGACCATCTCTAAACACAGTTTTGAAGAATGT- 116
Query 285 AAGT-GGGGA-TTCAAGAAGCCATTAAATTTCCGTTCACATAAGGATCCTGACCACAAGG 342
|| | ||| || ||||| || |||| ||| |||||||||| | || | |
Sbjct 117 TCGTAGAGGACTT-AAGAAACCTTTAAGTTTTGGTTCACATAA-TAAGAAGA-GAGATTC 173
Query 343 AAACATCTAGT---ATTACTCGGAAGAACATCATAAACCCGC-AGGATTCGTTTCTCCAG 398
|| |||||| | ||| | |||||| || |||||||| | |||| || ||| | |||
Sbjct 174 TAA-TTCTAGTACCACTACACAGAAGAATATTATAAACCCACAAGGA-TCTTTTTTACAG 231
Query 399 AATTGGAACAAAATATTTCTCTTTGCTTGTGTGGTTGCTTTGGCGATTGATCCATTGTTT 458
|| ||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||
Sbjct 232 AACTGGAACAAAATCTTTCTTTTTGCTTCAGTGATTGCTTTGGCTATTGATCCATTGTTT 291
Query 459 TTCTACATTCCCATTGTCGATGGCGCAAGGCACTGTCTTACTTTGGA-CAAAAAGTTGGA 517
||||| ||||| ||||| ||||| | ||| |||||||||| |||| | | || |||||
Sbjct 292 TTCTATATTCCTATTGTTGATGGAGAAAGACACTGTCTTAATTTGCATC-GTAACTTGGA 350
Query 518 GATAGCTGCAAGTTTTCTTCGGACACTCATCGATGCCTTT-TACATTATTCACATTGTGT 576
|||||| || ||| | ||||| || | || |||| |||| ||||| |||||||||||||
Sbjct 351 GATAGCAGCTAGTGTGCTTCGCACGTTTATAGATG-CTTTCTACATCATTCACATTGTGT 409
Query 577 TTCAGTTCAGGACAGCTTACATCGCTCCTTCTTCGCGGGTTTTTGGAAGAGGTGAATTGG 636
||||||| || || ||||| ||| |||||||||| || ||||| |||||||| || ||||
Sbjct 410 TTCAGTTTAGAACTGCTTATATCTCTCCTTCTTCTCGTGTTTTCGGAAGAGGCGAGTTGG 469
Query 637 TAGATGATGCTAAGGCTATAGCTATAAAGTATCTCTCATCTTACTTCATCATTGATGTAC 696
| |||||| |||| |||||||| || ||||| ||||| || ||||||||||| ||| | |
Sbjct 470 TTGATGATCCTAAAGCTATAGCCATCAAGTACCTCTCCTCCTACTTCATCATCGATCTTC 529
Query 697 TCTCTATCCTTCCTCTCCCACAGATAGTAGTTTTAGCCGTTAT-TCAAAGCGTCAACCAG 755
| ||||||||||| ||||||||| | ||||| ||||| || || | || |||||| ||
Sbjct 530 TTTCTATCCTTCCACTCCCACAGCTTGTAGTCTTAGCTGTCATCCCCAA-TGTCAACAAG 588
Query 756 CCAGTCTCTTTGTTCACAAAAGACTACCTTAAAT-A-TGTCATAATTGCTCAATATGTTC 813
|| ||||||||| |||| || ||||| || || | ||||||| || ||||||| |||
Sbjct 589 CCGGTCTCTTTGATCACTAAGGACTA--TTTGATAACTGTCATATTTACTCAATACATTC 646
Query 814 CTCGGATTCTCCGTATGTATCCGCTTTACACCGAAGTGACCAGAACATCTGGCATTGTTA 873
| ||||||| ||||| ||||| |||||||| ||||| || |||||||||||||| ||||
Sbjct 647 CAAGGATTCTTCGTATCTATCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTA 706
Query 874 CTGAAACAGCAAGGGCTGGAGCTGCTTGGAACCTCTCTCTCTATATGTTAGCCAGTCATG 933
||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 707 CTGAAACCGCTTGGGCTGGAGCTGCTTGGAACCTATCTCTCTATATGTTAGCCAGTCATG 766
Query 934 TATTTGGAGCTTTATGGTACTTAATCTCAGTAGAACGAGAAGACAGATGCTGGCAAGAGG 993
| |||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 767 TGTTTGGAGCCTTATGGTACTTAATATCAGTAGAACGAGAAGACAGATGCTGGCGTGAAG 826
Query 994 CATGCGAGAAG--A-CAAAAGGTTGTGATAA---GAAATTTCTCTACT--G-TGAAAACG 1044
| || |||||| | || || | |||| ||| | ||||||||||| | || ||||
Sbjct 827 CTTGTGAGAAGATACCAGAA-G-TGTG-TAACTTTAGATTTCTCTACTGCGATGGAAAC- 882
Query 1045 ATCGCACTGTTAGCAACAATTTCCTGACCACTTCTTGCCCATTTATCGACCCTGGTGATA 1104
| | | |||||| ||| |||||||||| || || ||||| |||||| |||||| |||||
Sbjct 883 A--GTAGTGTTAGAAACGATTTCCTGACTACCTCGTGCCCGTTTATCAACCCTGATGATA 940
Query 1105 TAACAAACTCAACCATCTTCAACTTTGGCATCTTCACTGATGCTCTT-AAGAGTGGGGTC 1163
||||||| ||||| ||||||||||||| ||||| ||||||||| || ||||||||| |
Sbjct 941 TAACAAATTCAACTGTCTTCAACTTTGGTATCTTTACTGATGCT-TTAAAGAGTGGGATT 999
Query 1164 GTTGAATCACATGATTTCTGGAAGAAATTCTTCTACTGCTTCTGGTGGGGTCTGCGAAAT 1223
||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 1000 GTTGAATCAGATGATTTCTGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGTAAT 1059
Query 1224 CTGAGTGCATTGGGACAGAATCTCCAA-ACAAGCAAATTCGTTGGTGAAATCATATTTGC 1282
| |||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 1060 TTAAGTGCATTGGGACAAAATCT-CAATACAAGCAAATTCGTTGGGGAAATCATATTTGC 1118
Query 1283 TATATCAATCTGCATATCTGGACTAGTCTTATTTGCGCTACTTATCGGCAATATGCAGAA 1342
| ||||||| || |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1119 TGTATCAATTTGTATATCTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAA 1178
Query 1343 ATACTTGGAATCAACAACAGTTCGAGAGGAGGAAATGAGAGTGAGAAAGAGAGATGCAGA 1402
||||||||||||||| ||||| | || ||||| |||||||||||||| |||||||||||
Sbjct 1179 ATACTTGGAATCAACTACAGTGAGGGAAGAGGAGATGAGAGTGAGAAAAAGAGATGCAGA 1238
Query 1403 GCAGTGGATGTCTCATAGAATGTTACCTGAAGACCTGAGGAAACGTATCAGAAGATATGA 1462
||| |||||||||||| |||||||||| || ||| ||||||||||||||||||| |||||
Sbjct 1239 GCAATGGATGTCTCATCGAATGTTACCCGATGACTTGAGGAAACGTATCAGAAGGTATGA 1298
Query 1463 ACAATATAGATGGCAAGAGACAAGAGGAGTCGAAGAAGAAACCCTTCTTCGTAACCTCCC 1522
|| || | |||||| || || |||||||| |||||||||| |||||| ||||| |||||
Sbjct 1299 GCAGTACAAATGGCAGGAAACTAGAGGAGTAGAAGAAGAAAACCTTCTGCGTAATCTCCC 1358
Query 1523 TAAAGACCTTAGAAGAGACATTAAACGCCATCTCTGCCTTGATCTCCTCAAGAAAGTACC 1582
||||||||| || |||||||| ||||||||| ||||||| ||||| ||||||||||||||
Sbjct 1359 TAAAGACCTCAGGAGAGACATCAAACGCCATTTCTGCCTCGATCTTCTCAAGAAAGTACC 1418
Query 1583 TTTGTTTGAGATAATGGACGAACAGTTACTTGACGCGGTTTGCGATAGGCTAAAACCTGT 1642
| |||| ||||||||||| || || || || || || || || || | ||||||||| ||
Sbjct 1419 TCTGTTCGAGATAATGGATGAGCAATTGCTAGATGCCGTGTGTGACAAGCTAAAACCAGT 1478
Query 1643 GCTCTACACAGAGAACAGTTACGTGATCCGTGAAGGAGATCCTGTTGGA-GAAATGCTGT 1701
||||||||| |||||||| || | || || ||||||||||| || ||| || ||| |||
Sbjct 1479 GCTCTACACCGAGAACAGCTATGCAATTCGAGAAGGAGATCCAGT-GGAAGAGATGTTGT 1537
Query 1702 TTGTGATGAGAGGAAGACTCG-TAAGTGCCACCACTAATGGAGGAAGAAGTGGGTTCTTC 1760
|||| |||||||||| ||| | | || |||||||| || || || | | || |||||
Sbjct 1538 TTGTCATGAGAGGAAAACT-GATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTT 1596
Query 1761 AATGCCGTGA-ACCTAAAGGCAAGTGA-TTTCTGCGGAGAAGATCTTCTCCCGTGGGCAT 1818
|| ||||| | ||||||| | ||||| ||| ||||| |||||||||||| | |||||||
Sbjct 1597 AACGCCGT-ATACCTAAAACCTAGTGACTTT-TGCGGCGAAGATCTTCTCACATGGGCAT 1654
Query 1819 TAGATCCTCAATCTTCTTCTCACTTTCCTATCTCGACAAGAACAGTTCAAGCTCTCACCG 1878
|||||||||||||||| ||||| ||||| || ||||| ||||||||||||||| | ||||
Sbjct 1655 TAGATCCTCAATCTTCGTCTCATTTTCCGATATCGACTAGAACAGTTCAAGCTTTAACCG 1714
Query 1879 AAGTCGAAGCCTTTGCTCTTACAGCTGAGGATCTCAAGTCT-GTCGCTTCACAATTCAGA 1937
|||| ||||||||||||||| |||| || ||||||||| || || |||||||| ||||||
Sbjct 1715 AAGTAGAAGCCTTTGCTCTTGCAGCAGATGATCTCAAG-CTTGTTGCTTCACAGTTCAGA 1773
Query 1938 CGCCTCCATAGCAAGCAGCTCCAACATACTTTCAGGTTTTATTCAGTGCAATGGAGAACA 1997
|| || |||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1774 CGACTACATAGCAAACAGCTTCAACATACTTTCAGGTTTTATTCGGTTCAATGGAGAACT 1833
Query 1998 TGGAGCGTATCTTTTATACAAGCAGCGTGGCGGAGATACTGTCGGAGGAAGTTAGCAA-A 2056
||| | | ||||| |||||||| |||||||||||| | || |||||||| |||| | |
Sbjct 1834 TGGGGTGCGTCTTTCATACAAGCGGCGTGGCGGAGACATTGCCGGAGGAAACTAGCTAGA 1893
Query 2057 GTCATTA-CGCGATGAAGAAGAGCG-TCTCCGAGAAGCGCTGGCTAATCAAGATAAAGAA 2114
|||||| | ||| |||||||| || | ||||| || ||| | | | ||| | |||
Sbjct 1894 -TCATTAAC-CGAAGAAGAAGATCGAT-TCCGA-AA-CGC-GA-TCA-CAAAACGC-GAA 1944
Query 2115 CGCAATGCTGCAACCGTGTCTTCGTCCTTGAGCCTTGGAGGTGCT-C-TT-TACGCGTCG 2171
|||||||| || || ||||||| | ||||| || ||| | || |||||||||
Sbjct 1945 CGCAATGCGGC----GT--CTTCGTC-T--AGCCT-GGT--TGCAACGTTATACGCGTCG 1992
Query 2172 CG-TTTCGCTTCAAACGCGCTTCACAATCTG 2201
|| ||| |||||||||||||||| |||||||
Sbjct 1993 CGGTTT-GCTTCAAACGCGCTTCGCAATCTG 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116264462220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5