BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470143
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01310.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 1308 0.0
> AT1G01310.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr1:120154-121130 FORWARD LENGTH=977
Length=977
Score = 1308 bits (708), Expect = 0.0
Identities = 802/847 (95%), Gaps = 8/847 (1%)
Strand=Plus/Plus
Query 1 TTTCACCTTCATTTAACGTAATTAACTCTCCGATTAAATTTGTTAT-C-TCAtttt-ttt 57
|||||||| || |||||||||||||||||||||||||| ||| || | | |||| |||
Sbjct 3 TTTCACCTACAATTAACGTAATTAACTCTCCGATTAAACTTG--ATCCTTTGTTTTGTTT 60
Query 58 ttttGTAATGGAGCTCCGTAAACGGAAAATACGAGCTCCATTACACATCTTCGTCGGCAT 117
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TTTTGTAATGGAGCTTCGTAAACGGAAAATACGAGCTCCATTACATATCTTCGTCGGCAT 120
Query 118 AACGTTATT-CTACCTTCAGCTTTGGTCGGTAACGGCCCAAATTAACCATGAAGAGTCTT 176
|||||| || || ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 121 AACGTTCTTCCT-CCTTCAGCTTTGGTCGGGAACGGCCCAAATTAACCATGAAGACTCTT 179
Query 177 CCACAAAACCCTCGGTTAATAACTCCCCGTCAGCGACGAGTACTCGGCTTCTGTTGTCAC 236
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CCACAAAACCCTCCGTTAAAAACTCTCCGTCAGCGACGAGTACTCGGCTTCTGTTGTCAC 239
Query 237 CACCTTCGTTCACCGGAAACCGATTCTCGTTCACGTTCAGGTGGAGGAGAAGACGACGTC 296
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 240 CACCTTCGTTCACCGGAAACCGATTCTCGTTCAGGTTCAGGTGGAGGAGAATACGACGTC 299
Query 297 GTAACAAAGTCAACAGAGCGAGCAGAGAGTTTTTAATCGCACATAACCTCGTACGAGCGC 356
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 GTAACAGAGTCAACAGAGCGAGCAGAGAGTTTTTAATCGCACATAACCTCGTAAGAGCGC 359
Query 357 GCGTGGGAGAACCACCGTTTCAATGGGACGGAAGACTAGCGGCGTACGCGCGCACGTGGG 416
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 GCGTGGGAGAACCACCGTTTCAATGGGACGGAAGATTAGCGGCGTACGCGCGCACGTGGG 419
Query 417 CGAATCAGCGCGTGGGAGATTGTAGGCTTGTTCACTCTAACGGGCCGTATGGAGAAAACA 476
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGAATCAGCGCGTGGGTGATTGTAGGCTTGTTCACTCTAACGGGCCGTATGGAGAAAACA 479
Query 477 TATTTTGGGCCGGAAAGAATAACTGGAGGCCCAGAGATATTGTTAACGTGTGGGCCGATG 536
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 480 TATTTTGGGCCGGAAAGAATAACTGGAGCCCCAGAGATATTGTTAATGTGTGGGCCGATG 539
Query 537 AGAATAAATTCTACGACGTGAGAGGTAACACGTGTGAGCCGCAACACATGTGTGGACATT 596
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 540 AGGATAAATTCTACGACGTGAAAGGTAACACGTGTGAGCCGCAACACATGTGTGGGCACT 599
Query 597 ACACGCAGATCGTGTGGAGAGATAGTACCAAGGTTGGATGCGCACGTGTGGATTGTTCAA 656
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct 600 ACACGCAGATCGTGTGGAGAGATAGTACCAAGGTCGGATGCGCAAGTGTGGATTGTTCGA 659
Query 657 ACGGCGGCGTTTACGCCATTTGTGTTTATAACCCACCGGGAAATTACGAAGGTGAAAATC 716
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACGGCGGCGTTTATGCGATTTGTGTTTATAACCCACCGGGAAATTACGAAGGTGAAAATC 719
Query 717 CGTTTGGAAGTAATGATGGTCAGATTGGTCTTGTCCGGGATGAACCACCGGCGGTGATCG 776
||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 720 CGTTTGGAAGTTATGATGATCAGATTGGTCTTGCCCGGGATGATCCACCGGCGGTGATCG 779
Query 777 GAGGAATGGCTTGAGAGTGGAGGACACGGCGGTGACACAATCCACGTTTAGTTATTATAt 836
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||
Sbjct 780 GAGGAATGGCTTGAGAGTGGAGGACACGGCGGTGTCACAATCCACTTTTAGTTACTA-AT 838
Query 837 ttttttt 843
|||||||
Sbjct 839 TTTTTTT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5