BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470144
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01305.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 619 6e-177
> AT1G01305.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:119397-119997
FORWARD LENGTH=601
Length=601
Score = 619 bits (335), Expect = 6e-177
Identities = 422/464 (91%), Gaps = 6/464 (1%)
Strand=Plus/Plus
Query 1 TAAATCTACACACAAAACCTTACCAAAAACCATGGGAAAGCC-AGCAAGCGTATCTCCGG 59
|||||||||||||||||||| | ||||||||||||||||||| || |||||| ||||||
Sbjct 2 TAAATCTACACACAAAACCTCATCAAAAACCATGGGAAAGCCAAG-AAGCGTGTCTCCGA 60
Query 60 CGATCTTCCTCCTAGTCATCCTTC-TGGTGACGGCCGGAGAGACGACAGAGGCGAAGCCA 118
| ||||||||||||||||||| || ||||||| |||||||||| ||| ||||||||||||
Sbjct 61 CCATCTTCCTCCTAGTCATCC-TCTTGGTGACCGCCGGAGAGAAGACGGAGGCGAAGCCA 119
Query 119 TGGTGGGAGAAAGTAGGAGATTCCATCGGGAACATTGTCGGAGGAGTAGGAGATGCGGTG 178
|||||| ||||||| ||||||||||||||||| || | ||||||| || || |||||||
Sbjct 120 TGGTGGAAGAAAGTCGGAGATTCCATCGGGAATATAGCCGGAGGAATAAGAAATGCGGTT 179
Query 179 GGGAATTTTAAAGCAGTGGAGATGGGATTGTCTTTGAAAGGAGGATCTTGTGTGAGAGAG 238
||||||| |||| ||||||||||||||||||| || |||||||||| |||||||||| ||
Sbjct 180 GGGAATTATAAACCAGTGGAGATGGGATTGTCGTTAAAAGGAGGATTTTGTGTGAGAAAG 239
Query 239 CTTCTATCTGTGAGTACGAATATATTCAGTGAATGGTGTATAGCTCTTAATGATCCAAGA 298
||||| ||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTCTGTCTTTGAATACGAATGTGTTCAGTGAATGGTGTATAGCTCTTAATGATCCAAGA 299
Query 299 GCTCCCATGTATATGAAGATTGAGAATATACCAACTGGTGTGTCAATCGAGTCCATTTTG 358
||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 GCTCCTATGTACATGAAGATTGAGAATATACCAAGTGGTGTGTCAATCGAGTCCATTTTA 359
Query 359 AAGAAGCCTGTTGATTTTATCAAGCAA-CATTATCCCAATTTCTTGAAAGTTTGGAACTT 417
||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 360 AAGAAGCCTATTGATTTAATCAAG-AACCATTATCCCAATTTCTTGAAAGTTTGGAACTT 418
Query 418 TAACCAGAAAACTAAGAGAAAGCCGAGACGTGCTCTTTAATTTT 461
||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 419 TAACCAGAAAATTAAGAGAAAGCCTAGACGTGCTCTTTAATTTT 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22067541811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5