BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470145
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01300.1 | Symbols: | Eukaryotic aspartyl protease family p... 2314 0.0
> AT1G01300.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:116943-118764 FORWARD LENGTH=1822
Length=1822
Score = 2314 bits (1253), Expect = 0.0
Identities = 1444/1535 (94%), Gaps = 17/1535 (1%)
Strand=Plus/Plus
Query 1 aaaaaaa-aTGGTAGGAAGAAGAAAAGctttactcttttctctttgtttcttcttcctct 59
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 115 AAAAAAAGATGGTAGGAAGAAGAAAAGCTTTACTCTTTTCTCTCTGTTTCTTCTTCCTCT 174
Query 60 ctcttccttgcttctcttctcttcCATCATTCCAAACCCTAATCCCCAATTCTCATTCTC 119
||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||| |
Sbjct 175 CTCTTCCTTCCTTCTCTTCCCTTCCATCCTTCCAAACCCTATTCCCCAATTCTCATTCCC 234
Query 120 TTCCTTCAGCTTCTCCCATCTCATTCCAACCCGAATCCGAACCCGACTCTGAGTCACTGC 179
|||||| ||||||||| ||||||||||||||| | | ||||||| ||||||||||
Sbjct 235 TTCCTTGTGCTTCTCCCGTCTCATTCCAACCCG-A--C---TCCGACTCCGAGTCACTGC 288
Query 180 TAGGATCCGAATTTGAATCCGGATCCGACTCCGAG------TCTTCCATTACTCTAAACC 233
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 289 TAGAATCCGAATTTGAATCCGGATCCGACTCCGAGTCTTCTTCTTCCATTACTCTAAACC 348
Query 234 TCGACCACATCGATGCTCTCTCCTCCAACAAAACACCAC-AAGAGCTCTTCAGCTCCCGT 292
||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||
Sbjct 349 TCGACCACATCGATGCTCTCTCCTCCAACAAAACACC-CGACGAGCTATTCAGCTCCCGT 407
Query 293 CTCCAACGCGACTCCCGGCGCGTGAAATCAATCGCCTCACTCGCCGCTCAAATCCCCGGG 352
|||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 408 CTCCAACGTGACTCCCGGCGCGTGAAATCTATCGCCACACTCGCCGCTCAAATCCCCGGA 467
Query 353 AGAAACGTGACTCGCGCGCCACGTCCCGGTGGATTCAGCAGCTCAGTGGTCTCTGGTCTC 412
||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 468 AGAAACGTGACTCACGCGCCACGACCCGGTGGATTCAGCAGCTCAGTCGTCTCTGGTCTC 527
Query 413 TCTCAAGGAAGTGGTGAATACTTCACGCGCCTCGGTGTCGGAACTCCGGCGAGATATGTT 472
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 528 TCTCAAGGAAGCGGTGAATACTTCACGCGCCTCGGTGTCGGCACTCCGGCGAGATATGTT 587
Query 473 TACATGGTGCTCGACACCGGAAGTGACATCGTTTGGCTCCAATGTGCTCCTTGTCGGAGA 532
|||||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||
Sbjct 588 TACATGGTGCTCGACACCGGCAGCGACATCGTCTGGCTACAATGCGCTCCTTGTCGGAGA 647
Query 533 TGTTACTCTCAATCCGACCCGATATTCGACCCGAGAAAATCCAAGACCTATGCCACAATC 592
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGCTACTCTCAATCCGACCCGATATTCGACCCGAGAAAATCCAAGACCTATGCCACAATC 707
Query 593 CCCTGTTCTTCACCTCACTGCCGGCGATTAGACTCCGCCGGATGCAACACCCGTCGTAAA 652
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 708 CCCTGTTCTTCACCTCACTGCCGCCGATTAGACTCCGCCGGATGCAACACCCGTCGTAAG 767
Query 653 ACTTGTCTCTACCAAGTCTCATACGGAGATGGTTCTTTCACCGTCGGTGATTTCTCCACC 712
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 768 ACTTGTCTCTACCAAGTCTCTTACGGAGATGGTTCTTTCACCGTCGGCGATTTCTCCACC 827
Query 713 GAAACTCTAACTTTCCGACGAAATCGCGTTAAAGGCGTCGCTCTCGGATGTGGCCACGAC 772
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 828 GAAACGCTAACTTTCCGGCGAAATCGCGTTAAAGGCGTTGCTCTCGGATGTGGCCACGAC 887
Query 773 AACGAAGGTCTCTTCGTCGGAGCCGCCGGTTTATTAGGTCTCGGTAAAGGAAAATTATCA 832
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 888 AACGAAGGTCTCTTCGTCGGAGCCGCCGGTTTATTAGGACTCGGTAAAGGTAAATTATCG 947
Query 833 TTTCCCGGTCAAACCGGTCACCGGTTTAATCAGAAATTCTCGTACTGTTTAGTCGATAGA 892
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 948 TTCCCCGGTCAAACCGGTCACCGGTTTAATCAGAAATTCTCTTACTGTTTAGTCGACAGA 1007
Query 893 TCCGCTTCTTCGAAACCTTCCTCAGTCGTCTTCGGAAACGCCGCCGTGTCACGAATCGCG 952
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1008 TCCGCTTCTTCGAAACCTTCCTCGGTCGTCTTCGGAAACGCCGCCGTATCACGAATCGCG 1067
Query 953 AGATTCACGCCGCTTTTGTCAAACCCAAAGCTCGACACTTTCTACTACGTCGAGCTTCTC 1012
||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1068 AGATTCACGCCACTTTTGTCAAACCCAAAACTCGACACTTTCTACTACGTCGGGCTTCTG 1127
Query 1013 GGAATTAGCGTCGGAGGGACACGTGTCCCCGGCGTGGCGGCTTCTCTTTTTAAACTCGAC 1072
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1128 GGAATTAGCGTCGGAGGGACACGTGTCCCCGGCGTAACGGCTTCTCTTTTTAAACTTGAC 1187
Query 1073 CAGATCGGTAACGGTGGGGTTATTATCGATTCGGGTACGTCTGTGACCCGGTTGATCCGA 1132
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CAGATCGGTAACGGTGGAGTTATTATCGATTCGGGTACGTCTGTGACCCGGTTGATCCGA 1247
Query 1133 CCCGCTTATATTGCTATGAGAGACGCGTTCCGGGTCGGAGCTAAGACCTTGAAAAGAGCT 1192
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1248 CCAGCTTATATTGCTATGAGAGACGCGTTCCGGGTCGGAGCTAAGACATTGAAAAGAGCT 1307
Query 1193 CCGGATTTCTCACTCTTCGACACGTGTTTCGATCTCTCTAATATGAACGAGGTCAAAGTA 1252
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1308 CCGGATTTCTCACTCTTCGACACGTGTTTCGATCTCTCCAATATGAACGAGGTTAAAGTA 1367
Query 1253 CCCACGGTGGTTTTACATTTCCGTGGAGCTGACGTGTCACTTCCGGCGACCAATTACCTG 1312
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1368 CCGACGGTGGTTTTACATTTCCGTGGAGCTGACGTATCACTTCCGGCGACGAATTACCTG 1427
Query 1313 ATTCCGGTTGATACTAACGGTAAATTCTGTTTTGCGTTTGCCGGTACGATGGGCGGACTA 1372
|| || || ||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1428 ATCCCTGTGGATACCAACGGCAAGTTCTGTTTTGCGTTTGCCGGTACGATGGGCGGACTA 1487
Query 1373 TCCATAATTGGGAATATCCAGCAACAGGGTTTCCGGGTTGTATACGACTTAGCGAGTTCC 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TCCATAATTGGGAATATCCAGCAACAGGGTTTCCGGGTTGTATACGACTTAGCGAGTTCC 1547
Query 1433 CGGGTCGGGTTTGCTCCAGGAGGATGCGCTTAATTCT--GACCCGACCGGAACCGGTACG 1490
|||||||||||||||||||||||||||||||||| | || | ||||||| ||||||||
Sbjct 1548 CGGGTCGGGTTTGCTCCAGGAGGATGCGCTTAATAATTAGATCTGACCGGAGCCGGTACG 1607
Query 1491 GATAATGTACTTTTGCTTACGCTATTTAATGCTTA 1525
||||||||||||||| || | | ||||||||||||
Sbjct 1608 GATAATGTACTTTTGTTTTCTCAATTTAATGCTTA 1642
Score = 185 bits (100), Expect = 1e-45
Identities = 119/127 (94%), Gaps = 5/127 (4%)
Strand=Plus/Plus
Query 1525 ACAAGTGAATCTTTAAGCGGTGGAGTTGATTACGTGTTGATAAAATCTTCACGTGTTGTC 1584
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1672 ACAAGTGAATCTTTAAGCGGTGGAGTTGAATACGTGTTGATAAAATCTTCACGTGTTGTC 1731
Query 1585 GGCTGTATTATTAGTATCGTCTTTATATATTTTACACCTTTGGACCAAAGAGAGCGTGTA 1644
|||||||||||||||||||||||||| | || ||| || |||||||||||||||||||
Sbjct 1732 GGCTGTATTATTAGTATCGTCTTTAT-T-TT--ACATCTC-GGACCAAAGAGAGCGTGTA 1786
Query 1645 TGATTTT 1651
|||||||
Sbjct 1787 TGATTTT 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81575885625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5