BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470146
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01280.1 | Symbols: CYP703A2, CYP703 | cytochrome P450, fami... 1559 0.0
> AT1G01280.1 | Symbols: CYP703A2, CYP703 | cytochrome P450, family
703, subfamily A, polypeptide 2 | chr1:112263-113947 FORWARD
LENGTH=1602
Length=1602
Score = 1559 bits (844), Expect = 0.0
Identities = 959/1015 (94%), Gaps = 6/1015 (1%)
Strand=Plus/Plus
Query 485 TATTGGGTGCTTTCTCTATGAACAATGTGACTCGGATGCTACTAGGGAAACAATTCTTTG 544
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 548 TATTGGGTGCTTTCTCTATGAACAATGTGACTAGGATGCTACTAGGGAAACAATTCTTTG 607
Query 545 GACCTGGATCTCTAG-TACCCCCAAAAGAAGCCCAAGAGTTTATGCACATAACTCACAAA 603
| ||||||||||||| || |||||||||||||||||||||| |||||||||||||||||
Sbjct 608 GGCCTGGATCTCTAGTTA-GCCCAAAAGAAGCCCAAGAGTTTTTGCACATAACTCACAAA 666
Query 604 TTGTTTTGGCTGTTGGGTGTAATTTACCTAGGAGACTACTTGCCATTTTGGAGATGGGTG 663
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 667 TTGTTTTGGCTGTTGGGTGTAATTTACCTAGGAGATTACTTGCCATTTTGGAGATGGGTG 726
Query 664 GATCCGTCCGGATGCGAGAAAGAAATGAGGGACGTGGAGAAACGTGTTGACAATTTTCAC 723
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 727 GATCCGTCCGGATGCGAGAAAGAAATGAGGGACGTGGAGAAGCGTGTTGACGAGTTTCAC 786
Query 724 ACTAAGATCATCGACGAGCACAAAAGGGCAAAACAT-GAAAAAGAAGATACTAAC-GACG 781
|||||||||||||||||||||| ||||||||||| | ||| | ||||||| ||| || |
Sbjct 787 ACTAAGATCATCGACGAGCACAGAAGGGCAAAAC-TGGAAGATGAAGATAAAAACGGA-G 844
Query 782 ACATAGATTTTGTTGACGTTTTATTGTCTCTACCTGGTGAGAACGGAAAAGAACACATGG 841
|||| ||||||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 845 ACATGGATTTTGTTGACGTTTTGTTGTCTCTACCTGGTGAGAACGGGAAGGCACACATGG 904
Query 842 AAGACGTTGAAATTAAAGCTCTAGTTCAGGACATGATAGCTGCTGCGACAGATACGTCAG 901
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 905 AAGACGTTGAAATTAAAGCTCTAATTCAGGACATGATAGCTGCTGCGACAGATACGTCAG 964
Query 902 CGGTCACAAACGAATGGGCAATGGCTGAAGTGATTAAGCAACCACGAGTAATGCGTAAAA 961
| |||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||
Sbjct 965 CAGTCACAAACGAATGGGCAATGGCTGAAGCGATCAAGCAACCGCGAGTGATGCGTAAAA 1024
Query 962 TTCAAGAAGAGCTCGATAATGTCGTAGGATCAAACCGAATGGTCGATGAATCAGATCTAG 1021
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 1025 TTCAAGAAGAACTCGATAATGTCGTAGGATCAAATCGAATGGTCGACGAATCGGATCTAG 1084
Query 1022 TCCATTTAAACTATCTACGATGTGTGGTACGTGAAACGTTCCGAATGCATCCGGCCGGAC 1081
||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct 1085 TCCATTTAAACTATCTACGTTGTGTGGTACGAGAGACGTTCCGAATGCATCCAGCCGGAC 1144
Query 1082 CATTCTTGATCCCTCACGAATCCGTCCGACCAACGACGATCAACGGCTACTACATCCCAG 1141
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 1145 CATTCTTGATCCCTCACGAATCCGTCCGAGCAACAACGATCAACGGCTACTACATCCCGG 1204
Query 1142 CAAAGACACGTGTCTTCATCAATACACATGGATTGGGCCGAAACACTAAGATATGGGACG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CAAAGACACGTGTCTTCATCAATACACATGGATTGGGCCGAAACACTAAGATATGGGACG 1264
Query 1202 ACGTGGAAGATTTTAGGCCCGAACGACATTGGCCCGTGGATGGTAGCGGACGCGTTGAGA 1261
|||||||||| || ||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct 1265 ACGTGGAAGACTTCAGGCCAGAACGACACTGGCCCGTTGAAGGTAGCGGACGCGTTGAGA 1324
Query 1262 TAAGCCACGGACCGGATTTTAAGATATTGCCGTTTAGTGCCGGCAAGAGGAAATGTCCCG 1321
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TAAGTCATGGACCGGATTTTAAGATATTGCCGTTTAGTGCCGGCAAGAGGAAATGTCCCG 1384
Query 1322 GAGCTCCGTTAGGTGTGACGATGGTTCTAATGGCTTTGGCTCGGCTCTTCCATTGCTTTG 1381
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1385 GAGCTCCGTTAGGTGTGACGATGGTGCTAATGGCTTTGGCTCGGCTCTTCCATTGCTTTG 1444
Query 1382 ACTGGTCTTCACCGGAAAATATCGATACGGTGGAAGTTTACGGCATGACTATGCCTAAAG 1441
| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1445 AATGGTCTTCACCGGGAAATATTGATACGGTGGAAGTTTATGGCATGACTATGCCTAAGG 1504
Query 1442 CTAAACCATTATGGGCAATCGCTAAGCCACGATTGGCAGCTCATTTGTACACATA 1496
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 CTAAACCATTACGGGCAATCGCTAAGCCACGATTGGCAGCTCATTTGTACACATA 1559
Score = 749 bits (405), Expect = 0.0
Identities = 457/483 (95%), Gaps = 0/483 (0%)
Strand=Plus/Plus
Query 1 CTTATTGAACATAGAATATAAGATTAGATGATTTTGGTGCTTGTCTCCCTCTTCGCTGTT 60
||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 CTTGTTGAATATAGAATATAAGATTAGATGATTTTGGTGCTAGCCTCCCTCTTCGCTGTT 60
Query 61 CTTATTCTTAATGTTCTTCTATGGAGATGGCTCAAGGCTTCAGCATGTAAAGCCCAAAGG 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCATTCTTAATGTTCTTCTATGGAGATGGCTCAAGGCTTCAGCATGTAAAGCCCAAAGG 120
Query 121 CTTCCTCCAGGTCCACCAAGGTGGCCTATTTTGGGTAACCTTCTCCAATTGGGCCCTTTA 180
|||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||
Sbjct 121 CTTCCTCCAGGTCCACCAAGATTGCCTATTTTGGGTAACCTTCTTCAATTGGGGCCTTTA 180
Query 181 CCTCATCGGGACTTGGCTGGTCTATGCGATAAGTACGGACCACTAGTCTACCTCCGGCTT 240
|||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||||
Sbjct 181 CCTCATCGGGACTTGGCTTCTCTATGTGATAAGTACGGCCCACTTGTCTACCTCCGGCTT 240
Query 241 GGAAATGTAGATGCTATCACAACGAACGATCCCGATACCATCCGTGAGATTCTCTTACGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 GGAAATGTAGATGCTATCACAACGAACGATCCCGATACCATCCGTGAGATTCTTTTGCGG 300
Query 301 CAAGACGACGTTTTTGCATCGAGGCCCAAAACACTTGCCGCAGTCCACCTTGCGTATGGA 360
|| ||||| |||||| ||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 301 CAGGACGATGTTTTTTCATCGAGACCCAAAACACTCGCCGCAGTCCACCTAGCGTATGGA 360
Query 361 TGTGGGGACGTCGCATTAGCGCCAATGGGCCCCCATTGGAAAAGAATGAGGAGGATATGC 420
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TGTGGGGACGTTGCATTAGCGCCAATGGGCCCGCATTGGAAAAGAATGAGGAGGATATGC 420
Query 421 ATGGAACACCTACTTACAACCAAAAGGCTTGAATCATTTGCAACCCAACGGGCTGAGGAA 480
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 421 ATGGAACACCTACTTACAACCAAAAGGCTTGAATCTTTTACAACCCAACGGGCTGAGGAA 480
Query 481 GCT 483
|||
Sbjct 481 GCT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5