BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470147
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2902 0.0
> AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109032-111609 FORWARD LENGTH=2578
Length=2578
Score = 2902 bits (1571), Expect = 0.0
Identities = 1859/1994 (93%), Gaps = 36/1994 (2%)
Strand=Plus/Plus
Query 308 GATGAATATTGGTCGCGTAGTGTGGAACGAGGATGATAAAGCGATTGTTGCTTCGTTACT 367
|||||||||||||||| |||||||||||||||| ||||||||||||||||| || |||||
Sbjct 563 GATGAATATTGGTCGCCTAGTGTGGAACGAGGACGATAAAGCGATTGTTGCGTCATTACT 622
Query 368 TGGCAAACGAGCTCTCGATTACTTGCTTTCGAACTCTGTTTCAAATGCAAATCTCTTGAT 427
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 623 GGGCAAACGAGCTCTCGATTACTTGCTTTCCAACTCTGTTTCCAATGCTAATCTCTTGAT 682
Query 428 GACTAC-AGGAAGCGACGAGAATCTGCAGAACAAGCTCTCTGATCTCGTTGAGAGACCCA 486
|||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 683 GACT-CTAGGAAGCGACGAGAATCTGCAGAACAAGCTCTCGGATCTCGTCGAGAGACCCA 741
Query 487 ACGCTTCTAATTTCTCGTGGAACTACGCCATTTTCTGGCAGATTTCGAGGTCAAAGGCCG 546
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 742 ACGCTTCTAATTTCTCTTGGAACTACGCCATTTTCTGGCAGATTTCCAGGTCAAAGGCCG 801
Query 547 GAGATTTGGTGCTCTGTTGGGGAGATGGATATTGCAGAGAGCCTAAAGAAGGTGAGAAGT 606
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 802 GAGATTTGGTTCTCTGTTGGGGCGATGGATATTGCAGAGAGCCTAAAGAAGGAGAGAAAT 861
Query 607 CAGAGATCGTTAGAATTCTGAGTATGGGAAGAGAAGAAGAAACGCATCAGACTATGAGAA 666
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CAGAGATCGTTAGGATTCTAAGTATGGGAAGAGAAGAAGAAACGCATCAGACTATGAGAA 921
Query 667 AGAGAGTTTTGCAAAAGCTTCATGATTTGTTTGGTGGGTTAGAAGAAGAGAACTGTGCTT 726
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 922 AGAGAGTATTGCAAAAGCTTCATGATTTGTTTGGTGGCTCAGAAGAAGAGAACTGTGCTT 981
Query 727 TAGGACTAGATAGAGTTACTGACACTGAGATGTTTCTTCTTTCTTCAATGTATTTCTCAT 786
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 982 TAGGACTAGATAGAGTTACTGACACTGAGATGTTTCTTCTTTCTTCTATGTATTTCTCAT 1041
Query 787 TCCCTCGAGGTGAAGGTGGTCCAGGGAAGTGTTTTGCCTCTGGGAAACCGGTTTGGTTAT 846
||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 1042 TCCCTCGAGGTGAAGGTGGTCCAGGCAAGTGTTTTGCCTCTGCTAAACCTGTTTGGTTAT 1101
Query 847 CCGATGTGGTGAATTCGGGTTCTGATTATTGTGTTAGATCGTTTCTTGCTAAATCTGCTG 906
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1102 CCGATGTCGTCAATTCGGGTTCTGATTATTGCGTTAGATCGTTTCTTGCTAAATCTGCTG 1161
Query 907 GAATTCAGACGGTTGTTTTGGTTCCTACTGATCTTGGTGTTGTCGAGCTAGGCTCAACTT 966
| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1162 GCATTCAGACTGTTGTTTTGGTTCCTACTGATCTTGGTGTTGTTGAGTTAGGCTCAACTT 1221
Query 967 CATGTTTGCCTGAAAGTGAAGAGTCAATCTTGTCTATAAGATCATTGTTTTCGAGTAGTT 1026
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 1222 CATGTTTGCCTGAAAGTGAAGACTCAATCTTGTCTATAAGATCATTGTTTACCAGTAGTT 1281
Query 1027 TGCCTCCGGTTAGAGCTG-TGAC---GGCTGTTGCTTTACCTGAAAAGATAGATGATAGC 1082
|||||||||||||||||| || | ||||| || || |||||||||| |||| |
Sbjct 1282 TGCCTCCGGTTAGAGCTGTTG-CTTTACCTGTTACTGTAGCTGAAAAGAT---TGAT-G- 1335
Query 1083 AGAACGGTTAATGCTTCGAAGATATTTGGGAAGGATCTGCACAATTCAGGTTTTCTTCAT 1142
| ||| | || |||||||||| || |||||| ||||||||||||| ||||||||
Sbjct 1336 ATAACAG--AA-----CGAAGATATTCGGCAAGGATTTGCACAATTCAGGGTTTCTTCAA 1388
Query 1143 CATCATCAGTTTCACcaacaacaac--c-acaa-ca--acaacaacaacaGCATAGACAG 1196
||||||||| |||||||||||||| | |||| || ||||| |||||||||||||||
Sbjct 1389 CATCATCAGCATCACCAACAACAACAACAACAACCACCGCAACAGCAACAGCATAGACAG 1448
Query 1197 TTCAGAGAGAAACTTACGGTTAGAAAAATGGATGATAGAGCTCCCAAGAGAGTAGATGCT 1256
|| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1449 TTTAGAGAGAAACTCACGGTTAGAAAAATGGATGATAGAGCTCCCAAGAGATTAGATGCT 1508
Query 1257 TATCCTAATAATGGGAATAGGTTTATGTTTTCGAACCCAGGCACCAACAACAATTCTCTT 1316
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1509 TATCCGAATAATGGGAACAGGTTTATGTTTTCGAACCCAGGCACCAACAACAACACTCTT 1568
Query 1317 CTGAGTCCTACTTGGGTCCAACCGGAGAACTACACGAGGCCCATCAATGTGAAGGAAGTT 1376
||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1569 CTGAGTCCTACTTGGGTTCAACCTGAGAACTACACGAGGCCAATCAACGTGAAGGAAGTT 1628
Query 1377 CCGAGCACGGATGAGTTCAAGTTTTTACCTTTGCAGCAATCATCGCAGAGGCTGCTTCCT 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCAAGCACGGATGAGTTCAAGTTTTTACCTTTGCAGCAATCATCGCAGAGGCTGCTTCCT 1688
Query 1437 CCTGCTCAAATGCAGATTGATTTCTCTGCTGCGAGTTCAAGGGCTTCCGAGAATAATTCA 1496
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1689 CCTGCTCAAATGCAGATAGATTTCTCTGCTGCGAGTTCAAGGGCTTCAGAGAATAATTCA 1748
Query 1497 GATGGAGAAGGAGGAGGGGAATGGGCAGACGCGGTGGGTGCTGATGACA-CTGGTAACAA 1555
||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||
Sbjct 1749 GATGGAGAAGGAGGAGGGGAATGGGCAGATGCAGTGGGTGCTGATGA-ATCTGGTAACAA 1807
Query 1556 CAGACCAAGAAAACGTGGAAGGAGACCTGCCAACGGAAGAGTGGAAGCTTTGAACCATGT 1615
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1808 CAGACCAAGAAAACGCGGAAGGAGACCTGCCAACGGAAGAGCGGAAGCTTTGAACCATGT 1867
Query 1616 TGAAGCAGAAAGGCAGCGGCGTGAGAAGCTTAACCAGAGGTTTTACGCTCTGAGATCCGT 1675
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1868 AGAAGCAGAGAGGCAGAGGCGTGAGAAGCTTAACCAGAGGTTTTACGCTCTGAGATCCGT 1927
Query 1676 TGTTCCCAACATTTCCAAGATGGACAAAGCGTCGTTGTTGGGAGACGCAGTTTCTTACAT 1735
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1928 TGTTCCCAACATATCCAAGATGGACAAAGCGTCCTTGTTGGGAGACGCGGTTTCTTATAT 1987
Query 1736 AAACGAGCTTCACGCCAAGCTAAAGGTCATGGAAGCagagagagagagaTTAGGGTATAG 1795
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1988 AAACGAGCTTCACGCGAAGCTAAAGGTCATGGAAGCAGAGAGAGAGAGGTTAGGGTATAG 2047
Query 1796 CTCAAATCCACCTATCAGCTTGGAATCGGATATTAATGTTCAAACCTCAGGTGAAGATGT 1855
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 2048 CTCAAATCCACCTATCAGCTTGGATTCAGATATAAATGTTCAAACCTCAGGTGAAGATGT 2107
Query 1856 CACAGTGAGAATAAACTGTCCGTTGGAGTCTCATCCAGCTTCTAGAATCTTCCATGCGTT 1915
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2108 CACAGTGAGGATAAACTGTCCGTTGGAGTCTCATCCGGCTTCCAGAATCTTCCATGCGTT 2167
Query 1916 TGAAGAGACTAAAGTAGAAGTGATGAACTCGAACCTTGAAGTTTCTCAGGACACAGTGTT 1975
|||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2168 TGAAGAGAGTAAAGTAGAAGTGATAAACTCGAACCTGGAAGTTTCTCAGGACACAGTGTT 2227
Query 1976 GCATACGTTTGTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCTGCGTTGTC 2035
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2228 GCATACGTTTGTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCGGCCTTGTC 2287
Query 2036 TAGAGAGCCATCAAATTCAGTTCAGTCAAGAACATCATCTGGTAGATAGCCTTTTGAGAG 2095
|||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2288 TAGAGAGCAAACAAATTCAGTTCAGTCAAGAACATCATCAGGTAGATAGCCTTTTGAGAG 2347
Query 2096 ATAGAAGAAGGTGGAAAGTAAGTTTGTAATCAAGAACCGgttttgaatggttcttttttg 2155
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2348 ACAGAAGAAGGTGGAA-GTAAGTTTGTAATCAAGAACCGGTTTTGAATGGTTCTTTTTT- 2405
Query 2156 tttcttctaggtttcttttgtttttgctttttttttttttGGTTATATACCTGTAAGAAT 2215
| ||||||||| |||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 2406 T--CTTCTAGGTATCTTTTGTTTTTACCTTTTTTT-----GGTTATATACCTGTAAGAAT 2458
Query 2216 CCTCCAAACTAGGATTTTAGAAGTTTAATTGACAAAAGTAGACATTATCATTTACTCGGT 2275
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2459 CCTCCAAACTAGGATTTTAGAAGTTTTATTGACAAAAGTAGACATTATCATTTACTCGTT 2518
Query 2276 TTACAGTGGACAAA 2289
||||||||||||||
Sbjct 2519 TTACAGTGGACAAA 2532
Score = 246 bits (133), Expect = 6e-64
Identities = 285/349 (82%), Gaps = 48/349 (14%)
Strand=Plus/Plus
Query 1 AATAAAAAAGAGCACGAAGAACATGCGTCGGACTTTTCTCTCTCTTCCTTGAATTCATTC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 13 AATAAAAAAGAGCACGAAGAACATGCGTCGGAC---TCTCTCTCTTCCTTGAATTCATTC 69
Query 61 AATTGGCCACGGCGACAAAAGAGGGAGCCGATAGAGCGAAACTGAAAAATCtttttttGT 120
|||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||| |
Sbjct 70 AATTGGCCACGGCGACAAAACAGGGAGCCGATACAGCGAAACTGATACATCTTTTTTTAT 129
Query 121 TTTCAATTGGCTTCTTAGGGTTCTTTTTCGGGGAA---A--T--TT-GTTTGTCCATTTT 172
|||| | || |||||||||||||||||||||||| | | || |||||||||||||
Sbjct 130 TTTC--T-GGATTCTTAGGGTTCTTTTTCGGGGAATTTAGGTAATTTGTTTGTCCATTTT 186
Query 173 G-TGAGAT-----A--TT-AAAATTTGT-TTTTT----GG-TCGGATTCT-aaaaa---- 212
| || | | | || ||||||||| ||||| || ||||||||| |||||
Sbjct 187 GGTGGGGTTTGGGAGATTTAAAATTTGTGTTTTTTTTTGGGTCGGATTCTCAAAAATCTG 246
Query 213 a-----a--a-aa--TCTCGGTGGAAGA--CTGGCTTCAAATCTTCTCTACTGGTAAAAA 260
| | | || ||||||||||||| || | |||||||||||| ||||||||||||
Sbjct 247 ATTTTGAGGAGAAAATCTCGGTGGAAGAGACTTGATTCAAATCTTCTTTACTGGTAAAAA 306
Query 261 TATCTTCTTCTTAAT-CTTCATTTTTCTCTTGGTGAAGTTTGATTTTTG 308
||| ||||||| ||| | ||||||| || |||||| |||||||||||||
Sbjct 307 TATATTCTTCTCAATTCCTCATTTT-CTGTTGGTGGAGTTTGATTTTTG 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113603833335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5