BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470149
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01250.1 | Symbols: | Integrase-type DNA-binding superfamil... 1286 0.0
> AT1G01250.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:104491-105330 REVERSE LENGTH=840
Length=840
Score = 1286 bits (696), Expect = 0.0
Identities = 780/819 (95%), Gaps = 12/819 (1%)
Strand=Plus/Plus
Query 1 CACAACAGAGAATGAAGCTATCACCACCACCACTTACTAACAGCGAACCAACCGCCACCG 60
||| ||||||||||||||||||| |||||||| |||| |||| |||||||||||||||||
Sbjct 26 CACCACAGAGAATGAAGCTATCATCACCACCAGTTACCAACAACGAACCAACCGCCACCG 85
Query 61 CTTCTGCCGTGAAATCTTGCGGCGGAGTTGGCAAAGAAACCAG--C-TCGACCACGAGGC 117
|||||||||| |||||||||||||||| || ||||||||||| | |||||||||||||
Sbjct 86 CTTCTGCCGTTAAATCTTGCGGCGGAGGAGGTAAAGAAACCAGCTCATCGACCACGAGGC 145
Query 118 ATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 ATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAG 205
Query 178 AGCCCCGGAAAAAATCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTA 237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 AGCCCCGGAAAAAGTCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTA 265
Query 238 AAGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAATTTTCCC- 296
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 266 AGGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAA-TTTCCCT 324
Query 297 GACGAAATCGACGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCG 356
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GAAGAAATCGAGGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCA 384
Query 357 GCGGCCAAAGCAGCCAACGGCGTCAAGATCATCAAAATGGGAGATGATGACGTGGCAGAA 416
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 385 GCGGCCAAAGCAGCCAACGCCGTGAAGATCATCAAAATGGGAGATGATGACGTGGCAGGA 444
Query 417 ATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCGGAGCTTATGATGACTGGA 476
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 445 ATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCTGAGCTTATGATGAGTGGA 504
Query 477 GGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGA 564
Query 537 GACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGAGTGTTGCTGTCGATTGTGTCGTAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGAGTGTTGCTGTCGATTGTGTCGTAT 624
Query 597 TCGTTATACGTGTACGTTGTATTGTTATTGTGTTGGCTCACTTAATTTAATGCATATGCA 656
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 625 TCGTTATACGTGTACGTTGTATCGTTATTGTGTTGGCTCACTTAATTTAATGCATATGCA 684
Query 657 TGTATATTTTCATTTATTTGTTTCTAGTTTATTGTTTTACGCGATTAATAATTAGATACC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TGTATATTTTCATTTATTTGTTTCTAGTTTATTGTTTTACGCGATTAATAATTAGATACC 744
Query 717 TGTTTCTTAAGTTAGTTATCAGGTTTCTACG-ATCTTGATATATACGTATAACGGTATAA 775
||||||| |||||||||||||||||| |||| |||| | | |||||||||| | |
Sbjct 745 TGTTTCTCAAGTTAGTTATCAGGTTTGTACGCATCTACAAAAATACGTATAA-G-T---- 798
Query 776 GTATGTTCTTATATACAGTTTTAGTTTGCATAAGTATTG 814
|||||||||||||||||||||| ||||||||||||||||
Sbjct 799 GTATGTTCTTATATACAGTTTTTGTTTGCATAAGTATTG 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39634741983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5