BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470153
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01230.1 | Symbols: | ORMDL family protein | chr1:97456-992... 1184 0.0
> AT1G01230.1 | Symbols: | ORMDL family protein | chr1:97456-99240
FORWARD LENGTH=832
Length=832
Score = 1184 bits (641), Expect = 0.0
Identities = 745/791 (94%), Gaps = 23/791 (3%)
Strand=Plus/Plus
Query 1 GTCGTCTTTCACGGGCACACAATATTAAACCAAACAAACAAACAATCCTTCTTCTCGCCG 60
|||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1 GTCGTCTTTCACGGGCACACAAAATTAAACCAAAGAAACAAACAATCCTTGTTCTCGCCG 60
Query 61 AAAGAGAGAATTTTGTGAATCTGGGTTTTCAATTTAGGTGTTTAATTTAAGATTTTGATC 120
||| ||||||||||||||||||||||||| | || ||||| ||||| |||||||||||||
Sbjct 61 AAATAGAGAATTTTGTGAATCTGGGTTTTTAGTTCAGGTG-TTAATATAAGATTTTGATC 119
Query 121 AAAAGAAGACGAGATTCGATCCGAT-CGATCAGATTTGTACAAGGAGAAATGGCGAATCT 179
||||||||||||||||||||||||| ||||| || ||| ||| |||||||||||||||
Sbjct 120 AAAAGAAGACGAGATTCGATCCGATCCGATCTGA-TTG---AAGAAGAAATGGCGAATCT 175
Query 180 GTATGTGAAAGCTGTTCCACCACCGGATATGAATAGGAATACGGAATGGTTCATGTATCC 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GTATGTGAAAGCGGTTCCACCACCGGATATGAATAGGAATACGGAATGGTTCATGTATCC 235
Query 240 AGGAGTTTGGACTACTTACATGCTCATTCTCTTCTTCGGTTGGCTCGTTGTTCTCTCTGT 299
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 236 AGGAGTTTGGACGACTTACATGCTTATTCTCTTCTTCGGTTGGCTCGTTGTTCTCTCTGT 295
Query 300 CTCTGGTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTGTAAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTCTGGTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTGTAAC 355
Query 360 GTATCACAGCTTCCACTGGATGAAAGGAACTCCTTTTGCAGATGACCAAGGAATCTACAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTATCACAGCTTCCACTGGATGAAAGGAACTCCTTTTGCAGATGACCAAGGAATCTACAA 415
Query 420 TGGTTTAACTTGGTGGGAACAAATGGACAATGGTCAACAACTTACCCGCAACCGCAAATT 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 416 TGGTTTAACTTGGTGGGAACAAATGGACAATGGTCAACAGCTTACCCGCAACCGCAAATT 475
Query 480 TCTTACCGTAGTTCCTGTTGTCCTGTACTTGATAGCATCGCATACAACAGATTACAGACA 539
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 476 TCTTACCCTAGTTCCTGTTGTTCTGTACTTGATTGCATCGCATACAACAGATTACAGACA 535
Query 540 TCCATGGCTGTTCCTCAACACACTCGCTGTGATGGTTCTCGTTGTTGCCAAGTTCCCCAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCCATGGCTGTTCCTCAACACACTCGCTGTGATGGTTCTCGTTGTTGCCAAGTTCCCCAA 595
Query 600 CATGCACAAGGTACGCATCTTTGGTATCAATGGTGATAAATAAGTTTTCTTTTGCGGTAA 659
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 596 CATGCACAAGGTACGCATCTTTGGTATCAATGGTGATAAATAAGTTTCCTTTA-CGGCAA 654
Query 660 GAGAACACCTCAAAGAAGAAGGAAAAGGGGGATATAAGCAAACatatatatatatatatG 719
|||||||||| ||||||| | |||||||| |||||||| ||||||||||| |
Sbjct 655 GAGAACACCTGAAAGAAG--G-AAAAGGGG-ATATAAGCGAACATATATAT--------G 702
Query 720 TGTAAATGTTCATATGAGTTGGTTTAATTCTCGAGTCGTCATGTTTCT-GTTGGATATTT 778
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 703 TGTAAATGTTCATATGAGTTGGTTTAATTCTCGAGTC---ATGTTTTTTGTTGGATATTT 759
Query 779 GTAAGTAAACT 789
|||||||||||
Sbjct 760 GTAAGTAAACT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5