BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470154
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01225.1 | Symbols: | NC domain-containing protein-related ... 1243 0.0
> AT1G01225.1 | Symbols: | NC domain-containing protein-related
| chr1:95987-97407 FORWARD LENGTH=1025
Length=1025
Score = 1243 bits (673), Expect = 0.0
Identities = 811/872 (93%), Gaps = 31/872 (4%)
Strand=Plus/Plus
Query 1 CTTGTAACGCCGTTTCCTGCATTTTCCACAAGCAAGG-AATAAAAAAGCTTTGTGTGCag 59
||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||
Sbjct 1 CTTGTAACGCCGTTTCCTGCATTTTCCACAAGCAAGGTAA-AAAAAAGC-TT-TGTGCAG 57
Query 60 aaagagagagaagaagaagaagaagaaTGGGTTTGCTTACGAACAAGATGGAGAGAGAAG 119
|||||||| |||||||| | || |||||||||||||||||||||||| ||||||||||
Sbjct 58 --AGAGAGAG-AGAAGAAG-A-AA-AATGGGTTTGCTTACGAACAAGATTGAGAGAGAAG 111
Query 120 AGTTAAAGGCAGGAGATCACATCTACACTTACAGAGCAATCTTCGCTTATTCTCACCACG 179
|| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 112 AGCTAAAGCCAGGAGATCACATCTATACTTACAGAGCAATCTTCGCTTATTCTCACCACG 171
Query 180 GAATCTTTGTCGGTGGGTCCAAAGTTGTTCATTTCAGACCTGAACACAACCCCATGG--- 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GAATCTTTGTCGGTGGGTCCAAAGTTGTTCATTTCAGACCTGAACACAACCCCATGGATT 231
Query 237 -----A-GTCATC---ATCGTCATCTTCCTCTGATGATATTTGTTCCATATTTCCTGATT 287
| ||||| ||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 232 CATCAACATCATCAATATCATCATCTTCCTCTGAAGATATCTGTTCCATATTTCCTGATT 291
Query 288 GCGGTTTCAGACAACCGGACAGTGGAGTAGTCCTTTCATGTTTAGACTGTTTCCTCAAGA 347
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 292 GCGGTTTCAGACAACCGGACAGTGGAGTAGTCCTTTCTTGCTTAGACTGTTTCCTCAAGA 351
Query 348 ACGGCTCACTCTACGGCTTCGAATATGGAGTCAGTCCATCGGTTTTCCTAACCAAAATCC 407
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 352 ACGGCTCACTCTACTGCTTCGAATATGGAGTCAGTCCATCGGTTTTCCTAACCAAAGTCC 411
Query 408 GCGGAGGCACTTGCACAACCGCGCAATCTGATCCAACTGATTCGGTGATCCACAGGGCAA 467
||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 412 GCGGAGGGACTTGCACAACCGCGCAATCTGATACAACTGATTCAGTCATCCACAGGGCAA 471
Query 468 TGTACCTTCTCCAAAACGGATTTGGCAACTACGACATTTTCAAGAACAACTGTGAAGATT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 472 TGTACCTTCTCCAAAACGGATTTGGCAACTACGACATTTTCAAGAACAACTGTGAGGATT 531
Query 528 TCGCGCTCTATTGCAAGACGGGTTTGCTTATAATGGATAAGCTCGGTGGTGTAGGGAGAA 587
||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 532 TCGCGCTCTATTGCAAGACCGGTTTGCTTATAATGGATAAGCTCGGTG-T--AGGGAGAA 588
Query 588 GCGGTCAAGCTTCTTCAATTGTTGGTGCTCCTTTGGCTGCACTTCTCTCTTCACCTTTCA 647
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 589 GCGGTCAAGCTTCTTCAATTGTTGGTGCTCCTTTGGCTGCACTCCTCTCTTCTCCTTTCA 648
Query 648 AATTGCTGATTCCAAGTCCCATTGGTGTGGCAACTGTTACTGCTGGTATGTACTGTATGA 707
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 649 AATTGCTTATTCCAAGTCCCATTGGTGTGGCAACAGTTACTGCTGGTATGTACTGTATGA 708
Query 708 GTCGTTATGCTACTGATATTGGCGTTAGAAGCGACGTCATTAAGGTCTCAGTTGAAGATT 767
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 709 GTCGCTATGCTACCGATATTGGTGTTAGAAGCGACGTCATTAAGGTCTCAGTTGAGGATT 768
Query 768 TGGCTCTCAACCTTGATTTGAAGACCATTGAGCAAGGTgaagaagaagaagaaga--a-g 824
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |
Sbjct 769 TGGCTCTCAACCTTGACGTAAAGACCATTGAGCAAGGTGAAGAAGAAGAAGAAGACGAAG 828
Query 825 aaga---TTCCGATACCGACTATGTTAGGTGA 853
|||| ||| |||||||||||||||||||||
Sbjct 829 AAGAAGATTCTGATACCGACTATGTTAGGTGA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41593873716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5