BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470156
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01200.1 | Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase ho... 1182 0.0
AT4G07524.1 | Symbols: | Ras-related small GTP-binding family ... 137 2e-31
> AT1G01200.1 | Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase
homolog A3 | chr1:86515-88213 REVERSE LENGTH=982
Length=982
Score = 1182 bits (640), Expect = 0.0
Identities = 747/796 (94%), Gaps = 17/796 (2%)
Strand=Plus/Plus
Query 1 TTTCACTAACTCCCACTTTACTCAAAAGAGACTCAAAAAC-TT-TAG-TGTTTTCTTCAT 57
||||||| ||||||||||||||||||||||||| |||| || ||| ||||||||||||
Sbjct 1 TTTCACTCACTCCCACTTTACTCAAAAGAGACT--TAAACTTTATAGTTGTTTTCTTCAT 58
Query 58 CAGCCCAATAAGGCAATAATGAACGAAGAGATGAGCGGTGAGTCGCCGGAGAATAACAAA 117
||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CAG--C------GCAATAATGAACGAAGAGATGAGCGGTGAGTCGCCGGAGAATAACAAA 110
Query 118 CACGTAAAGAAACCGACGATGCCGGAAAAGATCGATTACGTGTTCAAGGTGGTTGTCATT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 111 CACGTAAAGAAACCGACGATGCCGGAAAAGATCGATTACGTGTTCAAGGTGGTGGTCATT 170
Query 178 GGAGATTCTGCTGTTGGGAAAACGCAGCTCCTCTCACGTTTTACACAGAACGAGTTCTGT 237
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 171 GGAGATTCTGCTGTCGGGAAAACGCAGCTCCTCTCACGTTTTACACACAACGAGTTCTGT 230
Query 238 TATGATTCAAAATCAACCATTGGTGTTGAGTTTCAGACAAGGACCATCACTCTTCAGGGC 297
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 231 TATGATTCAAAATCAACCATTGGTGTCGAGTTTCAGACACGGACCATCACTCTTCGGGGC 290
Query 298 AAACTCGTCAAAGCTCAGATCTGGGACACCGCCGGTCAAGAAAGATACAGAGCCGTGACG 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 291 AAACTCGTCAAAGCTCAGATCTGGGACACCGCCGGTCAAGAGAGATACAGAGCGGTGACT 350
Query 358 AGCGCCTATTACAGAGGTGCGTTAGGTGCGATGGTGGTTTACGACATTACCAAACGCGTC 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 351 AGCGCCTACTACAGAGGTGCGTTAGGTGCGATGGTGGTTTACGACATTACCAAACGCCTC 410
Query 418 TCGTTCGACCACGTGGCACGTTGGGTTGAGGAATTACGTGCTCACGCCGACGATTCCGCC 477
|| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 411 TCATTCGACCACGTTGCACGTTGGGTCGAGGAATTACGTGCTCACGCCGATGATTCCGCC 470
Query 478 GTGATCATGCTCGTAGGAAACAAAGCCGATCTCGCCGTTGATAAACGCGCCGTTCCTACG 537
|||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 471 GTGATCATGCTCGTCGGAAACAAAGCCGATCTCTCCGTTGGTAAACGTGCCGTTCCTACG 530
Query 538 GAGGACGCCGTCGAATTCGCTGAGACTCAACGGCtttttttCTCGGAAGTCTCGGCAT-T 596
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 531 GAGGATGCAGTCGAATTCGCCGAGACTCAACGGCTTTTTTTCTCGGAAGTCTCGGC-TCT 589
Query 597 AAGTGGCGGAAACGTCGACGAAGCTTTTTTCCGTTTACTCGAGGAGATTTTCAGCCGCGT 656
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AAGCGGCGGAAACGTCGACGAAGCTTTTTTCCGTTTACTCGAGGAGATTTTCAGCCGCGT 649
Query 657 TGTTGTTTCGAGAAAAGCTACGGAATCTGACGGCGGAGCCACCGTGAAGCTTGACGGTTC 716
|||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||||||
Sbjct 650 TGTTGTTTCGAGAAAAGCTATGGAATCCGACGGTGGAGCCACCGTGAAACTTGACGGTTC 709
Query 717 GAGGATTGATGTGATCTCTGGTTCGGATCTTGAGA-TCAGTAAGATCAAGGAACAAGCTT 775
||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 710 GAGAATTGATGTCATCTCTGGTTCGGATCTTGAGACT-AGTAATATCAAGGAACAAGCTT 768
Query 776 CGTGCTCGTGTTGAAA 791
||||||||||||||||
Sbjct 769 CGTGCTCGTGTTGAAA 784
Score = 148 bits (80), Expect = 7e-35
Identities = 145/172 (84%), Gaps = 22/172 (13%)
Strand=Plus/Plus
Query 790 AAAAGCCAATTATTGGGCC-TTCTTTAAGCCCACATATGACTCAGGATCTTTGTTT-GGC 847
||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| ||
Sbjct 809 AAAAGCCAATTATTGGGCCTTTCTTTAAGCCCATATATGACTC-GGATCTTTGTTTGGGT 867
Query 848 TTTTCA----T-----ATTACG-GGTGGTGCTTATAGTTGCTAATTGCTATCAAAAAGCT 897
|||||| | |||| | ||||||||||||| | ||| |||||||||||
Sbjct 868 TTTTCATGTTTAGAGAATTA-GAGGTGGTGCTTATA---G-TAA----AATCAAAAAGCT 918
Query 898 ATTCATGTGTCATTCGTAATCTCTTTGACATTCTTGTATATGTAAAGGAAAA 949
|||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 919 ATTCATGTGTCACTCGTAATCTCTTTGACATTCTTGTATATGTAAAGAAAAA 970
> AT4G07524.1 | Symbols: | Ras-related small GTP-binding family
protein | chr4:4345348-4345975 REVERSE LENGTH=213
Length=213
Score = 137 bits (74), Expect = 2e-31
Identities = 88/95 (93%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 229 GAGTTCTGTTATGATTCAAAATCAACCATTGGTGTTGAGTTTCAGACAAGGACCATCACT 288
|||||||||||||| ||||||||||||||| || | |||||||||||| |||||||||||
Sbjct 4 GAGTTCTGTTATGAGTCAAAATCAACCATTAGTATGGAGTTTCAGACACGGACCATCACT 63
Query 289 CTTCAGGGCAAACTCGTCAAAGCTCAGATCTGGGA 323
||||||||||||||||| |||| ||||||||||||
Sbjct 64 CTTCAGGGCAAACTCGTTAAAGATCAGATCTGGGA 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5