BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470161
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01140.3 | Symbols: CIPK9, PKS6 | CBL-interacting protein ki... 2422 0.0
> AT1G01140.3 | Symbols: CIPK9, PKS6 | CBL-interacting protein
kinase 9 | chr1:64167-67625 REVERSE LENGTH=1700
Length=1700
Score = 2422 bits (1311), Expect = 0.0
Identities = 1415/1465 (97%), Gaps = 7/1465 (0%)
Strand=Plus/Plus
Query 1 GAAGAAGAAAATGAGTGGGAGCAGAAGGAAGGCGACGACGCCGGCGAGTAGGACGCGAGT 60
||| |||||||||||||| ||||||||||| | | |||||||||||||||||||||||||
Sbjct 104 GAAAAAGAAAATGAGTGGAAGCAGAAGGAA-G-G-CGACGCCGGCGAGTAGGACGCGAGT 160
Query 61 AGGGAATTATGAGATGGGAAGAACTCTAGGAGAAGGAAGCTTCGCTAAGGTGAAATACGC 120
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 161 AGGGAATTACGAGATGGGACGAACTCTCGGAGAAGGAAGCTTCGCTAAGGTGAAATACGC 220
Query 121 GAGGAACACCGTCACCGGAGATCAAGCCGCTATCAAAATCCTCGACCGAGAAAAGGTCTT 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CAAGAACACCGTCACCGGAGATCAAGCCGCTATCAAAATCCTCGACCGAGAAAAGGTCTT 280
Query 181 CCGTCACAAAATGGTCGAACAGCTTAAAAGAGAGATATCGACAATGAAATTGATTAAACA 240
||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct 281 CCGTCACAAAATGGTCGAACAGCTTAAAAGAGAAATATCTACAATGAAACTGATTAAACA 340
Query 241 TCCAAATGTGGTTGAAATCATTGAGGTTATGGCGAGCAAAACGAAGATCTATATCGTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TCCAAATGTGGTTGAAATCATTGAGGTTATGGCGAGCAAAACGAAGATCTATATCGTTCT 400
Query 301 TGAGCTTGTCAATGGAGGTGAACTCTTTGATAAAATCGCGCAACAAGGGAGGCTTAAGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TGAGCTTGTCAATGGAGGTGAACTCTTTGATAAAATCGCGCAACAAGGGAGGCTTAAGGA 460
Query 361 GGATGAAGCTCGGAGATATTTTCAGCAGCTCATCAATGCTGTGGATTACTGCCACAGTCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GGATGAAGCTCGGAGATATTTTCAGCAGCTCATCAATGCTGTGGATTACTGCCACAGTCG 520
Query 421 AGGTGTCTACCACAGAGATCTCAAGCCTGAAAATCTTATCCTTGATGCAAATGGGGTTTT 480
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 521 AGGTGTCTACCACAGAGATCTCAAGCCTGAAAATCTGATCCTTGACGCAAATGGGGTTTT 580
Query 481 GAAAGTCTCTGATTTTGGGTTAAGCGCGTTCTCACGACAAGTTCGGGAAGATGGTTTGCT 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 581 GAAAGTCTCTGATTTTGGGTTAAGCGCCTTCTCACGACAAGTTCGGGAAGATGGTTTGCT 640
Query 541 TCACACAGCTTGTGGAACGCCAAACTACGTTGCTCCTGAGGTTTTATCAGACAAAGGCTA 600
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 641 TCATACAGCTTGTGGAACGCCAAACTACGTTGCCCCTGAGGTTTTGTCGGACAAAGGCTA 700
Query 601 TGACGGTGCAGCAGCAGATGTCTGGTCTTGTGGTGTAATTCTCTTTGTGCTCATGGCTGG 660
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 701 TGACGGTGCAGCAGCAGATGTCTGGTCTTGTGGTGTCATTCTCTTTGTGCTTATGGCTGG 760
Query 661 TTACTTGCCTTTTGATGAGCCAAATCTCATGACATTATACAAACGTATATGCAAGGCCGA 720
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 761 TTACTTGCCTTTTGATGAGCCGAATCTCATGACATTATACAAACGTATATGCAAGGCTGA 820
Query 721 GTTTAGCTGCCCACCATGGTTCTCGCAAGGTGCCAAGAGAGTCATTAAGCGTATTCTCGA 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 821 GTTTAGCTGCCCACCATGGTTCTCGCAAGGTGCCAAGAGAGTCATCAAGCGTATTCTCGA 880
Query 781 ACCCAACCCTATAACCAGAATAAGTATTGCAGAGCTACTAGAAGATGAATGGTTCAAGAA 840
|||||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 881 ACCCAACCCTATTACCAGAATAAGTATTGCAGAGTTGCTCGAAGATGAATGGTTCAAGAA 940
Query 841 AGGGTACAAGCCGCCATCATTTGACCAAGATGATGAGGACATAACCATAGATGATGTTGA 900
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 941 AGGGTACAAGCCGCCATCATTTGACCAAGATGACGAGGACATAACCATAGATGATGTTGA 1000
Query 901 TGCTGCTTTTAGTAACTCCAAGGAATGTCTTGTAACAGAGAAGAAGGAGAAACCGGTATC 960
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1001 TGCTGCTTTTAGTAACTCCAAGGAATGTCTTGTAACTGAGAAGAAGGAGAAACCTGTATC 1060
Query 961 CATGAACGCTTTCGAACTTATCTCTAGCTCAAGCGAGTTCAGTCTTGAAAACTTGTTCGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 CATGAACGCTTTCGAACTTATCTCTAGCTCAAGCGAGTTCAGTCTTGAAAACTTGTTCGA 1120
Query 1021 GAAGCAAGCGCAACTTGTGAAGAAAGAAACGCGGTTTACTTCTCAAAGATCTGCGAGTGA 1080
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1121 GAAGCAAGCGCAACTTGTGAAGAAAGAAACGCGGTTTACTTCTCAACGATCTGCGAGTGA 1180
Query 1081 AATAATGTCGAAAATGGAAGAAACCGCAAAGCCATTAGG-TTTCAATGTCCGTAAAGACA 1139
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1181 AATAATGTCGAAAATGGAAGAAACCGCAAAGCCATTAGGCTTT-AATGTCCGTAAAGACA 1239
Query 1140 ACTACAAGATAAAAATGAAAGGAGACAAAAGTGGTCGTAAAGGTCAGCTCTCCGTAGCTA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 ACTACAAGATAAAAATGAAAGGAGACAAAAGTGGTCGTAAAGGTCAGCTCTCCGTAGCTA 1299
Query 1200 CAGAGGTGTTTGAAGTGGCGCCATCGTTGCATGTGGTAGAGCTTAGGAAAACCGGCGGTG 1259
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1300 CAGAGGTGTTTGAAGTGGCGCCATCATTGCATGTGGTAGAGCTTAGGAAAACCGGTGGTG 1359
Query 1260 ATACCCTCGAGTTTCACAAGGTATTTGATCCGTTCTACAAAACCTTCTCATCTGGATTAA 1319
|||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 1360 ATACCCTCGAGTTTCACAAGGTATGTGATTCGTTCTACAAAAACTTCTCATCTGGATTAA 1419
Query 1320 AGGATGTAGTCTGGAATACTGATGCAGCCGCTGAAGAACAAAAGCAATAAAAAATAGCAA 1379
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1420 AGGATGTAGTCTGGAATACTGATGCAGCCGCTGAAGAACAAAAGCAATAAGAAATAACAA 1479
Query 1380 GTTGTTCAATTCAAAGTTTTTAATTAAAGTTGAACATGTATAATGAATAGTAAAAAATTC 1439
|||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||
Sbjct 1480 GTTGTTCAATTCAAAGTTTTTAATCAATGTTGAACATGTATAATGAATAGTAAACA-TTC 1538
Query 1440 TGAGAGTTGGCAAAATAGAATTATT 1464
|| |||||||||| ||| || ||||
Sbjct 1539 TG-GAGTTGGCAATATACAAGTATT 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75250616955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5