BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470171
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1... 2141 0.0
> AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase
E1 alpha | chr1:47485-49286 REVERSE LENGTH=1627
Length=1627
Score = 2141 bits (1159), Expect = 0.0
Identities = 1373/1470 (93%), Gaps = 40/1470 (3%)
Strand=Plus/Plus
Query 75 CAATGGCGACGGCTTTCGCTCCCACTAAGCTCACTGCCACGGTTCCTCTCCATGGATCTC 134
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 119 CAATGGCGACGGCTTTCGCTCCCACTAAGCTCACTGCCACGGTTCCTCTGCATGGATCCC 178
Query 135 AAGAGAATCGTCTCTTGCTTCCGATCCGATTGGCTCCTCCTTCTTCTTCTTCTTTCCTCG 194
| ||||||||||||||||| ||||||||||||| |||| || |||||||||||||||
Sbjct 179 ATGAGAATCGTCTCTTGCTCCCGATCCGATTGG---CTCC-TC--CTTCTTCTTTCCTCG 232
Query 195 GATCCACTCGTTCCCTCACCATTAATTCTTCTCGCAAACTCAATCACTCCAACGCCACCC 254
||||||| ||||||||| || | | ||||| |||||||||||||||||||||||
Sbjct 233 GATCCACCCGTTCCCTCTCC-------C-T-TCGCAGACTCAATCACTCCAACGCCACCC 283
Query 255 GTCGATCTCCCGTCGTCGCTGTTCAAGAAGTTGTCAAGGAGAAGCAATCCACCAATAAT- 313
||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 284 GTCGATCTCCCGTCGTCTCTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATA 343
Query 314 --AGCCTGTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGTA 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CCAGCCTGTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGTA 403
Query 372 GATCTTTCGAAGACATGTGTGCTCAAATGTATTACAGAGGGAAGATGTTTGGTTTTGTTC 431
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 404 GATCTTTCGAAGACATGTGTGCTCAAATGTATTACCGAGGCAAGATGTTTGGTTTTGTTC 463
Query 432 ACTTGTACAATGGCCAAGAAGCTGTTTCTACTGGCTTTATCAAGCTCCTTACCAAGAGTG 491
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 464 ACTTGTACAATGGCCAAGAGGCTGTTTCTACTGGCTTTATCAAGCTCCTTACCAAGTCTG 523
Query 492 ATTCAGTGGTTAGTACTTACCGTGATCATGTCCATGCGCTCAGCAAAGGTGTCTCTGCTC 551
| || || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 524 ACTCTGTCGTTAGTACCTACCGTGACCATGTCCATGCCCTCAGCAAAGGTGTCTCTGCTC 583
Query 552 GTGCTGTTATGAGTGAGCTCTTCGGGAAGGTTACGGGATGCTGCAGAGGTCAAGGTGGAT 611
||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 584 GTGCTGTTATGAGCGAGCTCTTCGGCAAGGTTACTGGATGCTGCAGAGGCCAAGGTGGAT 643
Query 612 CCATGCACATGTTCTCTAAAGAACACAACATGCTTGGTGGGTTTGCTTTTATTGGTGAAG 671
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 644 CCATGCACATGTTCTCCAAAGAACACAACATGCTTGGTGGCTTTGCTTTTATTGGTGAAG 703
Query 672 GGATTCCAGTGGCCACTGGTGCTG-CTTTCAGCTCTAAGTACAGGAGGGAAGTCTTGAAA 730
| ||||| || ||||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct 704 GCATTCCTGTCGCCACTGGTGCTGCCTTT-AGCTCCAAGTACAGGAGGGAAGTCTTGAAA 762
Query 731 CAGGATTGTGAAGATGTCACTGTCGCGTTTTTCGGAGATGGAACTTGTAATAACGGACAG 790
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 763 CAGGATTGTGATGATGTCACTGTCGCCTTTTTCGGAGATGGAACTTGTAACAACGGACAG 822
Query 791 TTCTACGAGTGTCTGAACATGGCTGCTCTGTATAAACTGCCTATTATCTTTGTTGTGGAG 850
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 823 TTCTTCGAGTGTCTCAACATGGCTGCTCTCTATAAACTGCCTATTATCTTTGTTGTCGAG 882
Query 851 AATAACTTGTGGGCGATTGGGATGTCTCACTTGAGAGCTACTTCTGACCCCGAGATATGG 910
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 883 AATAACTTGTGGGCCATTGGGATGTCTCACTTGAGAGCCACTTCTGACCCCGAGATTTGG 942
Query 911 AAGAAAGGTCCTGCTTTTGGGATGCCGGGTGTTCATGTTGACGGTATGGATGTGTTGAAG 970
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 943 AAGAAAGGTCCTGCATTTGGGATGCCTGGTGTTCATGTTGACGGTATGGATGTCTTGAAG 1002
Query 971 GTGAGGGAAGTGGCTAAAGAGGCAGTCACTAGAGCTAGAAGAGGAGAAGGTCCAACCTTG 1030
|| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1003 GTCAGGGAAGTCGCTAAAGAAGCTGTCACTAGAGCTAGAAGAGGAGAAGGTCCAACCTTG 1062
Query 1031 GTTGAATGTGAGACTTATAGATTCAGAGGACACTCGTTGGCTGATCCTGATGAGCTCCGT 1090
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1063 GTTGAATGTGAGACTTATAGATTCAGAGGACACTCCTTGGCTGATCCCGATGAGCTCCGT 1122
Query 1091 GATGCTGCTGAGAAAGCCAAATACGCGGCTAGAGACCCAATCGCAGCACTGAAGAAGTAT 1150
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1123 GATGCTGCTGAGAAAGCCAAATACGCGGCTAGAGACCCAATCGCAGCATTGAAGAAGTAT 1182
Query 1151 TTGATAGAGAACAAGCTTGTGAAGGAAGCAGAGCTAAAGTCAATAGAGAAAAAGATAGAC 1210
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TTGATAGAGAACAAGCTTGCAAAGGAAGCAGAGCTAAAGTCAATAGAGAAAAAGATAGAC 1242
Query 1211 GAGTTGGTGGAGGAAGCGGTTGAGTTTGCAGACGCGAGTCCACAGCCCGGTCGCAGTCAG 1270
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1243 GAGTTGGTGGAGGAAGCGGTTGAGTTTGCAGACGCTAGTCCACAGCCCGGTCGCAGTCAG 1302
Query 1271 TTGCTAGAGAATGTGTTTGCTGATCCAAAAGGATTTGGAATTGGACCTGATGGACGGTAC 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TTGCTAGAGAATGTGTTTGCTGATCCAAAAGGATTTGGAATTGGACCTGATGGACGGTAC 1362
Query 1331 AGATGTGAGGACCCCAAGTTTACTGAAGGAACAGCTCAAGTCTGAGAAGACAAGTTTAAC 1390
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1363 AGATGTGAGGACCCCAAGTTTACCGAAGGCACAGCTCAAGTCTGAGAAGACAAGTTTAAC 1422
Query 1391 CATAAGCTGTCTACTGTCTTTGGCTTCTCTTTGATGTTTCTATATATCTTATTAAGTTAA 1450
||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1423 CATAAGCTGTCTACTGTCT----CTTC-----GATGTTTCTATATATCTTATTAAGTTAA 1473
Query 1451 ATGCTACAGAGAATCAGTTTGAATCATTTGAACTTTTTGCTTCTCtttttttGTGTTGGG 1510
|||||||||||||||||||||||||||||| ||||||||||| | || || ||||
Sbjct 1474 ATGCTACAGAGAATCAGTTTGAATCATTTGCACTTTTTGCTT-T-TT-----GT-TTGG- 1524
Query 1511 TGTTACTAAA-TCATCACAAGGTTCTTCTT 1539
|||||||||| | |||||||||||||||||
Sbjct 1525 TGTTACTAAACT-ATCACAAGGTTCTTCTT 1553
Score = 100 bits (54), Expect = 3e-20
Identities = 59/61 (97%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 1 TCTCTTGTTCTCTCCGCCCATCTCTGCTCTCTTTTATTTTCCCAGAAA-tttttattttt 59
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 16 TCTCTTGTTCTCTCCGCCCATCTCTGCTCTCTTTTATTTTCCCAGAAAGTTTTTTTTTTT 75
Query 60 t 60
|
Sbjct 76 T 76
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5