BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470177
Length=2366
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01060.1 | Symbols: LHY, LHY1 | Homeodomain-like superfamily... 3301 0.0
> AT1G01060.1 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
protein | chr1:33666-37840 REVERSE LENGTH=2704
Length=2704
Score = 3301 bits (1787), Expect = 0.0
Identities = 2093/2236 (94%), Gaps = 40/2236 (2%)
Strand=Plus/Plus
Query 2 ttttttt-ttttGCTTCCGATTTGATTATTTCCGGGAACAATGACTTCTCCGGCTAGTTC 60
||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 157 TTTTTTTGTTTTGCTTCCGATTTGATTATTTCCGGGAACGATGACTTCTCCGGGGAGTTC 216
Query 61 CCAGTGAGATGAT--CT-AGTTTGCATATTTGGT-TCCTCCATGGCTACTCTCAAGGGTT 116
|| |||||||||| | || ||||||| || || |||||||||||||||||||||||||
Sbjct 217 CCGGTGAGATGATAAGTCAGATTGCATACTT-GTCTCCTCCATGGCTACTCTCAAGGGTT 275
Query 117 TTGGCTGCGATGGATTCGTTTGGTTTCTCTAGAATCTAAAGAGGTTATCACAACGGCTTT 176
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTGGCTGCGGTGGATTCGTTTGGTTTCTCTAGAATCTAAAGAGGTTATCACAACGGCTTT 335
Query 177 GCAATTTGGAAACTTTCATGTTTGGGGAGATCAAAGATGGTTTCTTTATTATATTTTACT 236
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 336 GCAATTTGAAAACTTTCATGTTTGGGGAGATCAAAGATGGTTTCTTTTTTATACTTTACT 395
Query 237 TGTTAGAGAGGATTTGAAGCAGCGAATAGCTGCAACGGTCCTGTTATGGATACTAATACA 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 396 TGTTAGAGAGGATTTGAAGCAGCGAATAGCTGCACCGGTCCTGTTATGGATACTAATACA 455
Query 297 TCTGGAGAAGAATTATTAGCTAAGGCAAGAAAGCCGTATACAATAACAAAGCAGCGAGAG 356
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 456 TCTGGAGAAGAATTATTAGCTAAGGCAAGAAAGCCATATACAATAACAAAGCAGCGAGAG 515
Query 357 CGATGGACAGATGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCT 416
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CGATGGACTGAGGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCT 575
Query 417 TGGCAACGAATTGAAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGGCAACGAATTGAAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCA 635
Query 477 CAAAAGTTCTTCACAAAGTTGGAGAAAGAGGCTGAAGCTAAAGGCATCCCTGTTTGCCAA 536
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 636 CAAAAGTTCTTCACAAAGTTGGAGAAAGAGGCTGAAGTTAAAGGCATCCCTGTTTGCCAA 695
Query 537 GCTTTGGACATGGAAATCCCACCTCCTCGTCCTAAACGGAAACCCAATACTCCTTATCCT 596
||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 696 GCTTTGGACATAGAAATTCCGCCTCCTCGTCCTAAACGAAAACCCAATACTCCTTATCCT 755
Query 597 CGAAAACATGGGAATAACGGTACATCTTCGTCACAAATATCATCAGCAAAAGATGCAAAA 656
||||| | |||||| |||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 756 CGAAAGCCTGGGAACAACGGTACATCTTCCTCTCAAGTATCATCAGCAAAAGATGCAAAA 815
Query 657 CTTGTTTCGTCGGCCTCTTCTTCACAGTTTAATCAGTCGTTCTTGGATTTGGAAAAAATG 716
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 816 CTTGTTTCATCGGCCTCTTCTTCACAGTTGAATCAGGCGTTCTTGGATTTGGAAAAAATG 875
Query 717 CCGTTTTCTGAGAATACATCAACTGGAAAAGAAAATCAAGATGATAATTGCTCGGGTGTT 776
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 876 CCGTTCTCTGAGAAAACATCAACTGGAAAAGAAAATCAAGATGAGAATTGCTCGGGTGTT 935
Query 777 TCTACTGTGAACAAGTATCCCTTACCAAAGAAAAAGGTAAGTGCCGATATTGAAACAAGT 836
|||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||
Sbjct 936 TCTACTGTGAACAAGTATCCCTTACCAACGAAACAGGTAAGTGGCGACATTGAAACAAGT 995
Query 837 AAGACCTCAACCGTGGACAACGCGGTTCAAGATGCTCCCAAGAAGAACAAACACAAAGAT 896
||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 996 AAGACCTCAACTGTGGACAACGCGGTTCAAGATGTTCCCAAGAAGAACAAAGACAAAGAT 1055
Query 897 GGTAACGATGGTACTG-T-T-CACAGCGTGCAAAACTACCCTTGGCATTTCCACGCGGGT 953
||||||||||||||| | | |||||| |||||||||||||||||||||||||||| | |
Sbjct 1056 GGTAACGATGGTACTACTGTGCACAGCATGCAAAACTACCCTTGGCATTTCCACGCAGAT 1115
Query 954 ATTGTGAACGGGAATATAGCAAAATGCCCTCAAAATCATCCCTTAGGTATGGTATCTCAA 1013
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1116 ATTGTGAACGGGAATATAGCAAAATGCCCTCAAAATCATCCCTCAGGTATGGTATCTCAA 1175
Query 1014 GACTTCATGTTTCATCCTATGAGAGAAGAAAGTCACGGGCACGCAAATCTTCAAGCTACA 1073
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1176 GACTTCATGTTTCATCCTATGAGAGAAGAAACTCACGGGCACGCAAATCTTCAAGCTACA 1235
Query 1074 ACAGCATCTGCTAC-A-----GCTTCTCATCAAGCGTTTCCAGCTTGTCATTCACAGGAT 1127
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1236 ACAGCATCTGCTACTACTACAGCTTCTCATCAAGCGTTTCCAGCTTGTCATTCACAGGAT 1295
Query 1128 GATTACCATTCGTTTCTACAGATGTCTTCTACTTTCTCCAATCTTATTATGTCAACTCTC 1187
||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1296 GATTACCGTTCGTTTCTCCAGATATCATCTACTTTCTCCAATCTTATTATGTCAACTCTC 1355
Query 1188 CTACAGAATCCTGCTGCTCATGCTGCAGCTACATTTACTGCTTCGGTCTGGCCTTATGCG 1247
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1356 CTACAGAATCCTGCAGCTCATGCTGCAGCTACATTCGCTGCTTCGGTCTGGCCTTATGCG 1415
Query 1248 AATGTTGGGAATTCTGGAGATTCGTCAACCCCAGTGAGCTCTTCTCCTCCAAGTATAGCT 1307
| ||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 1416 AGTGTCGGGAATTCTGGTGATTCATCAACCCCAATGAGCTCTTCTCCTCCAAGTATAACT 1475
Query 1308 GCCATTGCAGCTGCTACAGTAGCTGCTGCAACTGCTTGGTGGGCTTCTCATGGACTTCTT 1367
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GCCATTGCCGCTGCTACAGTAGCTGCTGCAACTGCTTGGTGGGCTTCTCATGGACTTCTT 1535
Query 1368 CCTGTATGTGCTCCAGCTCCAATTACATGTGTTCCATT---A-C-----CA-----A-CT 1412
|||||||| |||||||||||||| |||||||||||||| | | || | ||
Sbjct 1536 CCTGTATGCGCTCCAGCTCCAATAACATGTGTTCCATTCTCAACTGTTGCAGTTCCAACT 1595
Query 1413 CCAGCAATGACTGAGATGGATACCGTTGAAAATGCTCAACTACCGCTTGAGAAACAAAAC 1472
|||||||||||||| |||||||||||||||||| |||||| | | ||||||||||||||
Sbjct 1596 CCAGCAATGACTGAAATGGATACCGTTGAAAATACTCAAC--C-GTTTGAGAAACAAAAC 1652
Query 1473 ACAGCTCTGCAAGATCAAAACGTGGCTTCAAAATCTCCAGCTTCATCATCCGATGATTCA 1532
||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 1653 ACAGCTCTGCAAGATCAAAACTTGGCTTCGAAATCTCCAGCTTCATCATCTGATGATTCA 1712
Query 1533 GAGGAGACTGGAGTAACCAAGATAAATGTCGACTCAAAAACCCAAGG-TGATAAGGTTGG 1591
|| |||||||||||||||||| |||||| ||||||||||||| || | |||||| |||
Sbjct 1713 GATGAGACTGGAGTAACCAAGCTAAATGCCGACTCAAAAACC-AATGATGATAAAATTGA 1771
Query 1592 GGAGGTTGTTGTTGCTGCTGCTGTGCATGATTCAAACACTACCCAGAAGAAAAATATGGT 1651
||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||| | ||
Sbjct 1772 GGAGGTTGTTGTTACTGCCGCTGTGCATGACTCAAACACTGCCCAGAAGAAAAATCTTGT 1831
Query 1652 GGATCGGTCATCGTGTGGCTCAAACACACCTTCAGGGAGTGACGCGGAAACAGATGCATT 1711
||| || ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1832 GGACCGCTCATCCTGTGGCTCAAATACACCTTCAGGGAGTGACGCAGAAACTGATGCATT 1891
Query 1712 AGATAAATTGGAGAAAGATAAAGAGGATGTGAAGGAGACAGATGAAAATCAGCCAGATGT 1771
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1892 AGATAAAATGGAGAAAGATAAAGAGGATGTGAAGGAGACAGATGAGAATCAGCCAGATGT 1951
Query 1772 TATTGAGTTAAATAACCGTAAGATTAAAATGAGAGacaacaacaacaacaacaacaacCC 1831
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1952 TATTGAGTTAAATAACCGTAAGATTAAAATGAGAGACAACAACAGCAACAACAATG-C-- 2008
Query 1832 AACTACTGATTCATGGAAGGAAGTCTCCGAAGAGGGTCGTATAGCGTTTCAGGCTCTCTT 1891
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2009 AACTACTGATTCGTGGAAGGAAGTCTCCGAAGAGGGTCGTATAGCGTTTCAGGCTCTCTT 2068
Query 1892 TGCAAGAGAAAAATTGCCTCAAAGCTTTTCACCTCGTCAAGTGGCAGAGAATGTGAATAG 1951
||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2069 TGCAAGAGAAAGATTGCCTCAAAGCTTTTCGCCTCCTCAAGTGGCAGAGAATGTGAATAG 2128
Query 1952 AAAACAAAGTGACACAGCCA-TGCCATTGGCTCCTAATTTCAAAAGCCAGGATTCTTGTG 2010
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 2129 AAAACAAAGTGACAC-GTCAATGCCATTGGCTCCTAATTTCAAAAGCCAGGATTCTTGTG 2187
Query 2011 CTGCAGACCAAGAAAGAGTAGCAATGATCGGTGTTGGACCAGGCAAGAGTCTTAAAACGA 2070
|||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 2188 CTGCAGACCAAGAAGGAGTAGTAATGATCGGTGTTGGAACATGCAAGAGTCTTAAAACGA 2247
Query 2071 GACAGACAGGGTTTAAGCCATACAAGAGATGTTCAATGGAACTGAAAGAGAGCCAAGTTG 2130
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2248 GACAGACAGGATTTAAGCCATACAAGAGATGTTCAATGGAAGTGAAAGAGAGCCAAGTTG 2307
Query 2131 GGAACACAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAG 2190
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 GGAACATAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAG 2367
Query 2191 CTTCTACATGACAGAC 2206
||||||||||||||||
Sbjct 2368 CTTCTACATGACAGAC 2383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117469275300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5