BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470180
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01030.1 | Symbols: NGA3 | AP2/B3-like transcriptional facto... 2514 0.0
AT4G01500.1 | Symbols: NGA4 | AP2/B3-like transcriptional facto... 230 5e-59
> AT1G01030.1 | Symbols: NGA3 | AP2/B3-like transcriptional factor
family protein | chr1:11649-13714 REVERSE LENGTH=1905
Length=1905
Score = 2514 bits (1361), Expect = 0.0
Identities = 1750/1925 (91%), Gaps = 78/1925 (4%)
Strand=Plus/Plus
Query 1 ATATCATTCATGGGCCCCTACGCATTACTCGGTACCAATCTCGctctctctctctAAGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATCATTCATGGGCCCCTACGCATTACTCGGTACCAATCTCGCTCTCTCTCTCTAAGTC 60
Query 61 TTGAAACACTATCAAGAATCTCAAGCCACCATTTTTTCTTCATCCTCATAAAGAGAAAGA 120
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTGAAACTCTATCAAGAATCTCAAGCCACCATTTTTTCTTCATCTTCATAAAGAGAAAGA 120
Query 121 GAGAGATCCTCTTGTTTGGCAAGAACCCAATTTGAGTTCCAAGTCCTGATTTGCTCT-GA 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 121 GAGAGATCCTCTTGTTTGGCAAGAACCCAATTTGAGTTCTAAGTCCTGATTTGCT-TAGC 179
Query 180 TCTTTCTCTTTCCTTGATTTCATTC--TAT--AGTCAACGAGAAGATAATtatatatata 235
||||| ||||||||||||||||||| ||| |||||||| ||| | | |||| |||||
Sbjct 180 TCTTT-TCTTTCCTTGATTTCATTCTATATAAAGTCAACG-GAA-A-GA-TATACATATA 234
Query 236 taGTTTTCTTCCGATTCTAGGGTTTTCATATTTCATCTAAATTTTCATGGTCAAAGAAGA 295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 235 TAGTTTTCTTCCGATTCTAGGGTTTTCATATTTCCTCTAAATTTTCATGGTCAAAGAAGA 294
Query 296 AATTCAAAGAACCAATCGAACCAGGAAGAGAAAGAAAACATCAATATCAACAtctctctc 355
|| || ||||| |||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 295 AAATCTAAGAAACAATCGAACCAGCAAGAGAAAGAAGACTTCAATATCAACATCTCTCTC 354
Query 356 t--ctctctcGTATATTATAAGTCGAAGATCTCGAGTTGAG---TCATCATCGTTAATGG 410
| ||||||| | | |||| | | |||||||||||||||| |||||||||| |||||
Sbjct 355 TCCCTCTCTC-TCTCTTAT-ATTATAAGATCTCGAGTTGAGTCATCATCATCGTCAATGG 412
Query 411 CTTTGAAAAACGA-CGGCAACAATTCACCAAGTCAAGAACAAGAGGAAGGTTTAAACTTT 469
||||||||||| | | ||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 413 CTTTGAAAAAC-ATCCGCAACAATTCACCAATTGAAGAACAAGAGAAAGGTTTAAACTTC 471
Query 470 AGCAAGATTCACTGAGACTCATCTCAAGA---AAAGGAGaaa-aaaaGAGGAGCAAGGTT 525
| ||||||||||| |||| || || |||| || | ||| ||| |||||||||||
Sbjct 472 ATCAAGATTCACTAAGACCCA-CT-AAGAGCCAACTCA-AAACTAAA-CGGAGCAAGGTT 527
Query 526 TTGTCAAGAAA-CAACaaaaaaaaaaaaaaGATTCAAGAGCCATCGCATAAATCAAGATT 584
||| ||| ||| ||| ||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 528 TTGCCAA-AAACCAAAAAAAAAAAAAAAAAGATTCAAGAACCATCTCGTAAATCAAGATT 586
Query 585 TAACCAAGGCAAATCATATAATTCATCATGGATCTAT-CCT---T-AG-C-TC--CAACA 635
| |||||| |||||| |||| |||| |||||||||| ||| | | | | |||||
Sbjct 587 TCTCCAAGGAAAATCAGATAAGTCATAATGGATCTATCCCTGGCTCCGACAACAACAACA 646
Query 636 AGCTCCGACCAAGAACAAGACAGAGACCAAGAATTAACCTCCAACATCCGAGCAAGCAGC 695
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 647 AGTTCCGACCAAGAACAAGACAGAGACCAAGAATTAACCTCCAACATCGGAGCAAGCAGC 706
Query 696 AGCTCTGGCCCCAGCGGAAACAACAACAACCTTCCGATGATGATGATTCCACCACCGGAG 755
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 707 AGCTCCGGTCCCAGCGGAAACAACAACAACCTTCCGATGATGATGATTCCACCTCCGGAG 766
Query 756 AAAGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAGACTT 815
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AAAGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAGACTC 826
Query 816 GTGATCCCTAAACAACACGCTGAGAGGTATTTCCCACTAGACTCCTCAAACAACCAAAAC 875
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 827 GTGATCCCTAAACAACACGCTGAGAGGTATTTCCCTCTAGACTCCTCAAACAACCAAAAC 886
Query 876 GGCACGCTGTTGAACTTCCAAGACAGAAACGGCAAGATGTGGAGATTCCGTTACTCGTAT 935
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GGCACGCTTTTGAACTTCCAAGACAGAAACGGCAAGATGTGGAGATTCCGTTACTCGTAT 946
Query 936 TGGAACTCTAGCCAGAGCTACGTGATGACCAAAGGATGGAGCCGTTTCGTCAAAGAGAAA 995
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 947 TGGAACTCTAGCCAGAGCTACGTTATGACCAAAGGATGGAGCCGTTTCGTCAAAGAGAAA 1006
Query 996 AAGCTCGACGCAGGAGACATTGTCTCTTTCCAACGAGGCATCGGAGATGAGTCCGAAAGA 1055
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1007 AAGCTCGATGCAGGAGACATTGTCTCTTTCCAACGAGGCATCGGAGATGAGTCAGAAAGA 1066
Query 1056 TCCAAACTTTACATAGATTGGAGGCATAGACCCGACATGAGCCTCGTTCAGGCACATCAG 1115
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1067 TCCAAACTTTACATAGATTGGAGGCATAGACCCGACATGAGCCTCGTTCAAGCACATCAG 1126
Query 1116 TTTGGTAATTTCGGTTTCAATTTCAATTTCCCGACCACTTCTCAATATTCCAACAGATTT 1175
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TTTGGTAATTTTGGTTTCAATTTCAATTTCCCGACCACTTCTCAATATTCCAACAGATTT 1186
Query 1176 CATCCATTGCCGGAATACAAATCCGTCCCGATTCACCGGAGCTTGAACATCGGAAACCAC 1235
||||||||||| ||||| || |||||||||||||||||| |||| ||||||||||| |||
Sbjct 1187 CATCCATTGCCAGAATATAACTCCGTCCCGATTCACCGGGGCTTAAACATCGGAAATCAC 1246
Query 1236 CAACGTTCGTATTATAACAACCAGCGTCAAGAGTTCGTAGGGTATAATTATGGGAATTTA 1295
|||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1247 CAACGTTCCTATTATAACACCCAGCGTCAAGAGTTCGTAGGGTATGGTTATGGGAATTTA 1306
Query 1296 GCTGGAAGGTGTTACTACACGGGATCACCGTTAGATCAGAGGAACATTGTTGGATCAGAG 1355
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1307 GCTGGAAGGTGTTACTACACGGGATCACCGTTGGATCATAGGAACATTGTTGGATCAGAG 1366
Query 1356 CCGTTGGTTATAGACTCAGTCCCTGTGGTTCCCGGGAGATTAACCCCGGTGATATTACCA 1415
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1367 CCGTTGGTTATAGACTCAGTCCCTGTGGTTCCCGGGAGATTAACTCCGGTGATGTTACCG 1426
Query 1416 CCGCTTCCTCCGCCTCCTTCAACGGCGGGAAAGAGACTCAGGCTCTTTGGGGTGAATATG 1475
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1427 CCGCTTCCTCCGCCTCCTTCTACGGCGGGAAAGAGACTAAGGCTCTTTGGGGTGAATATG 1486
Query 1476 GAATGTGGTATTGACTATAATCAACAAGAAGAGTCATGGTTGGTGCCACGTGGCGAAATG 1535
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GAATGTGGCAATGACTATAATCAACAAGAAGAGTCATGGTTGGTGCCACGTGGCGAAATT 1546
Query 1536 GGTGCA---TCTTCTTCTTCTTCAGCTCTACGACTAAACATATCAACtgatcatgatgat 1592
|||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1547 GGTGCATCTTCTTCTTCTTCTTCAGCTCTACGACTAAATTTATCGACTGATCATGATGAT 1606
Query 1593 gatactgatgatggtgatggtggtgatgatgatCAATTTGCTAAGAAAGGGAAGTCTTCA 1652
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1607 GATAATGATGATGGTGATGATGGCGATGATGATCAATTTGCTAAGAAAGGGAAGTCTTCA 1666
Query 1653 CTTTCTCTCAATTTCAATCCATGAGAAGTTTCATCATCTTCTTATTAGTAAAT-T-T-TT 1709
||||||||||||||||||||||||||||||||||||||||||| || | ||| | | ||
Sbjct 1667 CTTTCTCTCAATTTCAATCCATGAGAAGTTTCATCATCTTCTTGTTT-TGAATCTCTCTT 1725
Query 1710 CA-AG-GTT--ATTAG-A-TT---CTA-GC-TAGT-GA-----G--AG-GA-AGAAATTA 1748
| | ||| ||||| | || ||| | || | || | || || || || |
Sbjct 1726 TATATTGTTTCATTAGTAATTTTTCTAAGGGTATTAGATTCTAGCTAGTGAGAGGAAGAA 1785
Query 1749 AAAACGATCTTCTTCGtttttttttttttggttatgaattttgttttc-gacatgttttt 1807
||||||||||||||||||||||| |||||||| |||| ||||| ||||||||| |
Sbjct 1786 AAAACGATCTTCTTCGTTTTTTT------GGTTATGATTTTT-TTTTCCGACATGTTTCT 1838
Query 1808 tGATGTTAATCA-C-T-AGGCTTTTGTCACCATGTTGAAACTCGCATCTTTTCAATTTTG 1864
||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 TGATGTTCATCATCATTAGGCTTTTGTCACCATGTTGAAACTCGCATCTTTTCAATTTTG 1898
Query 1865 TATAT 1869
|||||
Sbjct 1899 TATAT 1903
> AT4G01500.1 | Symbols: NGA4 | AP2/B3-like transcriptional factor
family protein | chr4:639247-640940 FORWARD LENGTH=1491
Length=1491
Score = 230 bits (124), Expect = 5e-59
Identities = 225/272 (83%), Gaps = 14/272 (5%)
Strand=Plus/Plus
Query 758 AGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAGACTTGT 817
||| |||||||||||||||||| | |||||||| |||||||| ||||| ||| | || ||
Sbjct 437 AGAGCACATGTTCGACAAAGTGTTGACACCAAGTGACGTCGGTAAACTAAACCGGCTCGT 496
Query 818 GATCCCTAAA-CAACACGCTGAGAGGTAT-TTCCCACTAGACTCCTCAAACAACCAAAAC 875
||| || ||| ||||| || |||| | | ||||| |||| |||| ||||||
Sbjct 497 GATTCC-AAAGCAACATGCAGAGAACT-TCTTCCCTTTAGA------GGACAATCAAAAC 548
Query 876 GGCAC-GCTGTTGAACTTCCAAGACAGAAACGGCAAGATGTGGAGATTCCGTTACTCGTA 934
||||| | ||||| | |||||||||| |||||||||||||||||| || |||||||||||
Sbjct 549 GGCACAG-TGTTGGATTTCCAAGACAAAAACGGCAAGATGTGGAGGTTTCGTTACTCGTA 607
Query 935 TTGGAACTCTAGCCAGAGCTACGTGATGACCAAAGGATGGAGCCGTTTCGTCAAAGAGAA 994
||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 608 TTGGAACAGTAGCCAAAGCTACGTGATGACCAAAGGATGGAGCCGTTTCGTCAAGGAGAA 667
Query 995 -AAAGCTCGACGCAGGAGACATTGTCTCTTTC 1025
||| ||| ||| ||||||| |||||||||
Sbjct 668 GAAA-CTCTTCGCCGGAGACACCGTCTCTTTC 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92519604435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5