BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470181
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01020.1 | Symbols: ARV1 | Arv1-like protein | chr1:5928-873... 1184 0.0
AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-6... 377 7e-104
> AT1G01020.1 | Symbols: ARV1 | Arv1-like protein | chr1:5928-8737
REVERSE LENGTH=1623
Length=1623
Score = 1184 bits (641), Expect = 0.0
Identities = 725/767 (95%), Gaps = 0/767 (0%)
Strand=Plus/Plus
Query 1 GAGAGAGAAAGAGCAATGGCGGCGAGTGAACACAGATGCGTGGGATGTGGTTTTAGGGTT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GAGAGAGAGAGAGCAATGGCGGCGAGTGAACACAGATGCGTGGGATGTGGTTTTAGGGTA 116
Query 61 AAGTCATTGTTCATTCAATACTCTCCGGGTAACATTCGTCTCATGAAATGCGGAAATTGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAGTCATTGTTCATTCAATACTCTCCGGGTAACATTCGTCTCATGAAATGCGGAAATTGC 176
Query 121 AAGGAAGTAGCAGACGAATACATCGAGTGTGAACGCATGATTATTTTCATCGATTTAATC 180
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AAGGAAGTAGCAGATGAGTACATCGAGTGTGAACGCATGATTATTTTCATCGATTTAATC 236
Query 181 CTTCATAGACCAAAGGTTTATAGACACGTCCTCTACAATGCAATTAATCCAGAAACTGTC 240
||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 237 CTTCACAGACCAAAGGTATATAGACACGTCCTCTACAATGCAATTAATCCAGCAACTGTC 296
Query 241 AATACTCAGCATTTGTTGTGGAAGTTGGTCTTCGTGTATCTTCTTCTAGACTCTTATAGA 300
|||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 297 AATATTCAGCATCTGTTGTGGAAGTTGGTCTTCGCCTATCTTCTTCTAGACTGTTATAGA 356
Query 301 AGCTTGCTACTGAGAAGAACTGATGACGAATCGAGCTTTTCTCATAGCTCGGTTCTTATA 360
|||||||||||||||| || |||||| ||||||||||||||| ||||| | |||||| ||
Sbjct 357 AGCTTGCTACTGAGAAAAAGTGATGAAGAATCGAGCTTTTCTGATAGCCCTGTTCTTCTA 416
Query 361 TCTATAAAGGTTCTAATCGGTGTCTTATCTGCAAACGCTGCATTTATCTTCTCTTTCGCC 420
|||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 417 TCTATAAAGGTTCTGATTGGTGTCTTATCTGCAAACGCTGCATTTATCATCTCTTTTGCC 476
Query 421 ATTGCGGCCAAGGGTTTGCTAAATGAAGTTTCCAGAGGAAGAGAGATTATGTTGGGGATA 480
|||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 ATTGCGACTAAGGGTTTGCTAAATGAAGTTTCCAGAAGAAGAGAGATTATGTTGGGGATA 536
Query 481 TGCATCTCTAGTTACTTCAAGATATTTCTGTTTGCGATGTTGGTATGGGAATTCCCAATG 540
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 TTCATCTCTAGTTACTTCAAGATATTTCTGCTTGCGATGTTGGTATGGGAATTCCCAATG 596
Query 541 TCAGTGATCTTCATTGTCGATATACTTGTCTTAACATCAAACTCCATGGCTCTTAAAGTG 600
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 597 TCAGTGATTTTTTTTGTCGATATACTTCTCTTAACATCAAACTCCATGGCTCTTAAAGTG 656
Query 601 ATGACTGAATCAACAATGACGAGATGCATAGCCGTATGCTTAATCGCGCACTTGGTTAGA 660
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 657 ATGACTGAATCAACAATGACCAGATGCATAGCCGTATGCTTAATCGCGCACTTGATTAGA 716
Query 661 TTCTTGGTGGGTCAGATCTTTGAGCCGACAATATTTTTGATACAGTTTGGATCTCTGATG 720
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 717 TTCTTGGTGGGTCAGATTTTTGAGCCGACAATATTTTTGATACAAATTGGATCTCTGTTG 776
Query 721 CAATATCTGTCTTATTTATTCAGAACCGTATGATCCCATCATCTTCC 767
|||||| |||||||||| ||||||| ||||||||||||||| |||||
Sbjct 777 CAATATATGTCTTATTTTTTCAGAATCGTATGATCCCATCAGCTTCC 823
> AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-644336
FORWARD LENGTH=855
Length=855
Score = 377 bits (204), Expect = 7e-104
Identities = 504/643 (78%), Gaps = 43/643 (7%)
Strand=Plus/Plus
Query 57 GGTTAAGTCATTGTTCATTCAATACTCTCCGGGTAACATTCGTCTCATGAAATGCGGA-A 115
|||||| || |||||||| ||||||||||| || || ||||||||||||||||| || |
Sbjct 64 GGTTAAATCTTTGTTCATACAATACTCTCCTGGAAATTTTCGTCTCATGAAATGC-GAGA 122
Query 116 ATTGC-AAGGAAGTAGCAGACGAATACATCGAGTGTGAACGC-A-TGATTATTTTCATCG 172
||||| || ||||||||||||||||| ||||||||| | || | |||||||||||||||
Sbjct 123 ATTGCGAA-GAAGTAGCAGACGAATATGTCGAGTGTG-A-GCTATTGATTATTTTCATCG 179
Query 173 ATTTAATCCTTCATAGACCAAAGGTTTATAGACACGTCCTCTACAATGCAATTAATCCAG 232
| || || ||||| | | |||||| |||||||||| | |||||||||| |||||| ||
Sbjct 180 ACTTGATTCTTCACAAAACAAAGGCTTATAGACACTTACTCTACAATGTTGTTAATCAAG 239
Query 233 AAACTGTC-AATACTCAGCATTTGTTGTGGAAGTTGGTCTTCG-TGTATCTTCTTCTAGA 290
|| ||| | ||| ||||||| | || ||||| |||||||| | | ||||||||||||||
Sbjct 240 AATCTG-CAAATGTTCAGCATCTATTATGGAAATTGGTCTTGGCT-TATCTTCTTCTAGA 297
Query 291 CT-CTTATAGAAGCTTGCTACTGAGAAGAACTGATGACGAATCGAGCTTT-TCTCAT-AG 347
| |||||||||||||||||||||||||||| |||||| ||| | | | ||| || ||
Sbjct 298 -TACTTATAGAAGCTTGCTACTGAGAAGAACCAATGACGGATCAAA-TGTGTCT-ATGAG 354
Query 348 CTCGGTTCTT-ATATCTATAAAGGTTCTAATCGGTGT-CTTATCTGCAAACG-CTGCATT 404
|| || || | |||| || ||||||| || ||| || |||||| || | |||||
Sbjct 355 CTTTCTTTTTGA-ATCTCTAGAGGTTCTGGTCAATGTACT-ATCTGCGAATTTC-GCATT 411
Query 405 TATCTTCTC-TTTCGCCATT-GCGGCCAAGGGTTTGCTAAATGAAGTT-T-CCA-GAGG- 458
| | ||||| ||| || ||| || || ||| || | | || ||| | ||| ||||
Sbjct 412 TGTTTTCTCATTT-GC-ATTTGCTGCTAAG--TT-GATGC-TG--GTTATGCCAAGAGGG 463
Query 459 AAGAGAGATTATGTTGGGGATATGCATCTCTAGTTACTTCAAGATATTTCTGTTTGCGAT 518
|| ||||||| | || ||| | ||||| |||||| ||||||| ||||| ||||| ||
Sbjct 464 AA-AGAGATTCTTTTAACGATCTTAATCTCGAGTTACGTCAAGATCTTTCTATTTGCTAT 522
Query 519 GTTGGTATGGGAATTCCCAATGTCAGTGATCTTCATTGTCGATATACTTGTCTTAACATC 578
| ||| |||||||||||| | || ||||||||||| || ||||| || || ||||| ||
Sbjct 523 GCCGGTCTGGGAATTCCCAGTTTCTGTGATCTTCATCGTAGATATGCTCGTTTTAACCTC 582
Query 579 AAACTCCA-TGGCTCTTAAAGTGATGACTGAATCAACAATGA-CGAGATGCATAGCCGTA 636
|||| | | | |||||||||||||||||||||||| ||| || | |||||| |||| ||
Sbjct 583 AAACGC-AGTTGCTCTTAAAGTGATGACTGAATCAGCAACGAGC-AGATGCTTAGCAGTG 640
Query 637 TGCTTAATCGCGCACTTGGTTAGATTCTTGGTGGGTCAGATCT 679
|| || || || |||| ||||||||||||||| ||||||||
Sbjct 641 TGTTTCATTGCACACTCAATTAGATTCTTGGTGGATCAGATCT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37273737074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5