BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470187
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02260.1 | Symbols: | Divalent ion symporter | chr1:440441-... 2200 0.0
> AT1G02260.1 | Symbols: | Divalent ion symporter | chr1:440441-442877
REVERSE LENGTH=2146
Length=2146
Score = 2200 bits (1191), Expect = 0.0
Identities = 1443/1561 (92%), Gaps = 31/1561 (2%)
Strand=Plus/Plus
Query 1 AGAAAATGGCAATGGCTCCAGTTATAAAGCTGGTTTTAGGATCAATAGCCTTTGCCATTT 60
|||||||||||||||||||||| ||||||||||| ||||| ||| | |||||||||||||
Sbjct 317 AGAAAATGGCAATGGCTCCAGTAATAAAGCTGGTCTTAGGTTCAGTTGCCTTTGCCATTT 376
Query 61 TCTGGGTATTAGCAGTGTTTCCCTCTGTGCCGTTCCTACCAATTGGTCGAACCGCCGGTT 120
||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 377 TCTGGATATTAGCAGTGTTTCCCTCTGTACCATTCCTACCAATTGGTCGAACCGCCGGTT 436
Query 121 CTCTGTTCGGTGCAATGTTAATGGTTATCTTCCAAGTGATAACCCCGGAACAAGCTTATG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 CTCTGTTCGGTGCAATGCTAATGGTTATCTTCCAAGTGATAACCCCGGAACAAGCTTATG 496
Query 181 CAGCCATTGATCTTCCGATACTCGGTCTTCTCTTTGGAACAATGGTTGTTAGTATATATC 240
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 497 CAGCCATTGATCTCCCGATACTCGGTCTTCTCTTTGGAACGATGGTTGTTAGTATATACC 556
Query 241 TTGAGAGAGCTGATATGTTCAAGTACTTAGGCACATTGCTTTCGTGGAAGAGTAAAGGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |
Sbjct 557 TTGAGAGAGCTGATATGTTCAAGTACTTAGGCACATTGCTTTCGTGGAAAAGCAGAGGTC 616
Query 301 CTAAAGACTTGCTATGTCGAGTCTGTCTTGTTTCCGCGGTTTCAAGCGCTCTGTTTACTA 360
| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 617 CGAAAGACTTGCTATGTAGAGTCTGTCTTGTTTCCGCTGTTTCAAGCGCTCTGTTTACTA 676
Query 361 ACGATACATCTTGTGTGGTTTTGACCGAGTTTGTGTTGAAGATCGCTAGGCAAAAGAACC 420
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 677 ACGATACATCTTGTGTGGTTTTAACCGAGTTTGTGTTGAAGATCGCTAGGCAAAAGAATC 736
Query 421 TCCCGCCTCACCCTTTTTTGCTCGCTTTGGCCACGAGTGCGAATATTGGTTCTTCTGCTA 480
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 737 TCCCGCCTCACCCGTTTTTGCTCGCTTTAGCCACGAGTGCGAATATTGGTTCTTCTGCTA 796
Query 481 CTCCCATTGGGAATCCACAGAATCTTGTTATCGCAGTTCAAAGCAAGATCCCCTTTTGGG 540
|||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 797 CTCCCATTGGGAATCCGCAGAATCTTGTTATTGCGGTTCAAAGCAAGATCCCGTTTTGGG 856
Query 541 AGTTTCTTCTTGGGGTTTTTCCTGCGATGATTGTTGGTATTACCGTCAATGCTATGCTTC 600
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 857 AGTTTCTTCTTGGTGTTTTTCCTGCGATGATTGTTGGTATTACCGTTAACGCTATGCTTC 916
Query 601 TTCTCGGTATGTATTGGCGGCTATTGTCAGATCATAAAGAGGACGAAGAAGAAGCAGGAG 660
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |
Sbjct 917 TTCTCGGTATGTATTGGCGGTTATTGTCAGATCATAAAGAGGATGAAGAAGAAGTAC-A- 974
Query 661 AAAATGCGGATTCTGAAGTTCTTGCTGTTGCTGAAGAAGATGTCACA-TCACATCGGTTT 719
||| ||| |||||||||||| |||| | ||||||||||| || || ||| ||||
Sbjct 975 AAA-TGCTGATTCTGAAGTTGTTGCC----C--AAGAAGATGTC-CAATCTCATAGGTTC 1026
Query 720 TCGCCAGCTACATTTTCACCAGT-TGCATCCGAAGAATCAAACTTCAGAATGGAT-CC-C 776
||||||||||||||||| ||||| | |||||||||| || ||||| ||||||||| || |
Sbjct 1027 TCGCCAGCTACATTTTCGCCAGTCT-CATCCGAAGATTCGAACTTGAGAATGGATGCCGC 1085
Query 777 -GAGACGCTTAGAAACAGAGCGGTTTCTGCAGGTGAGAGTGAATTAATGAGCCGCGATTC 835
||||| || ||||||||||||| ||| || |||||||| || ||||| ||| || ||||
Sbjct 1086 CGAGACTCTCAGAAACAGAGCGGGTTCAGCGGGTGAGAGCGAGTTAATAAGCTGCAATTC 1145
Query 836 AAATGCGTCAAGAGAACAA-ACT--GACGCAGAGTCTCAAGGAGAGAGCAATG-T----- 886
||||||||| ||||||||| || ||||||||||||||||||||||||||| |
Sbjct 1146 AAATGCGTCGAGAGAACAACACAACGACGCAGAGTCTCAAGGAGAGAGCAATAATACCAA 1205
Query 887 ---T-T-T-CCAGACCAAGAGATGGAGAAGAGTTTTATGGAAACCAAGTGTCTATTTGAT 940
| | | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 1206 CAATATGTTCCAGACCAAGAGATGGAGAAGAGTTTTATGGAAATCAAGTGTTTATTTCAT 1265
Query 941 CACATTAGGAATGCTGATATCTCTGGTTATGGGTTTAAACATGTCGTGGACCGCAATTAC 1000
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1266 CACATTAGGAATGCTAATATCTCTGCTTATGGGTTTAAACATGTCGTGGACCGCAATTAC 1325
Query 1001 TGCAGCTCTAGCTCTTGTCGTTCTTGATTTTAAAGATGCAAGGCCGTCTCTCGAGAAGGT 1060
|| |||||||| || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1326 CGCGGCTCTAGCACTCGTGGTTCTTGATTTCAAAGACGCAAGGCCGTCTCTCGAGAAGGT 1385
Query 1061 ATCATATTCGCTATTGATCTTCTTCTGCGGGATGTTCATTACCGTTGATGGATTCAACAA 1120
||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1386 ATCGTATTCGCTTTTGATCTTTTTCTGCGGGATGTTCATAACCGTTGATGGATTCAACAA 1445
Query 1121 AACTGGTATCCCTACCGCTCTATGGGACCTAATGGAGCCACATGCCAAAATCGATGAAGC 1180
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 1446 AACTGGTATCCCTACCGCTCTATGGGACCTAATGGAGCCATATGCCAAAATTGATCAAGC 1505
Query 1181 CAAAGGAACCGCGGTTCTAGCAGTTGTGATTCTTGTCCTCTCCAATGTAGCCTCTAATGT 1240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CAAAGGAATCGCGGTTCTAGCAGTTGTGATTCTTGTCCTCTCCAATGTAGCCTCTAATGT 1565
Query 1241 ACCAACTGTGCTTTTGTTGGGAGCAAGAGTGGCGGCATCAGCGATGGGGAAAGAGGAGGA 1300
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1566 ACCAACCGTGCTTTTGTTGGGAGCAAGAGTGGCGGCATCAGCGATGGGGAGGGAGGAGGA 1625
Query 1301 GAAGAAGGCGTGGTTGTTGCTGGCGTGGGTGAGCACGGTGGCTGGAAACTTGACGTTGCT 1360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1626 GAAGAAGGCGTGGTTGTTGCTGGCGTGGGTGAGCACAGTGGCTGGAAACTTGACGTTGCT 1685
Query 1361 TGGTTCAGCAGCAAACCTGATAGTGTGTGAGCAAGCTCGTAGGGCAGTGAGCCATGGATA 1420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1686 TGGTTCAGCAGCAAACCTGATAGTGTGTGAGCAAGCTCGTAGAGCAGTGAGCCATGGATA 1745
Query 1421 CACTCTGACTTTCACTAAACACTTGAAATTCGGTTTGCCTTCAACACTCATCGTCACTGC 1480
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1746 CACTCTCACTTTCACTAAACATTTCAAATTCGGTTTGCCTTCAACACTCATCGTCACTGC 1805
Query 1481 CATTGGTCTCTTTCTTATCAAGTAAATCATAGCTCACTCTGCATATATGCTTTCTTTTTT 1540
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 GATTGGTCTCTTCCTTATCAAGTAAATCATAGCTCACTCTGCATATATGCTTTCTTTTTT 1865
Query 1541 C 1541
|
Sbjct 1866 C 1866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5