BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470188
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02270.1 | Symbols: | Calcium-binding endonuclease/exonucle... 2516 0.0
> AT1G02270.1 | Symbols: | Calcium-binding endonuclease/exonuclease/phosphatase
family | chr1:443149-446235 REVERSE LENGTH=1645
Length=1645
Score = 2516 bits (1362), Expect = 0.0
Identities = 1495/1559 (96%), Gaps = 9/1559 (1%)
Strand=Plus/Plus
Query 1 AAAAAGATCT-TT-TGAGAATTCGaaaaaaaaaCTCAAATGCAAAGCCATCAGAATCGAA 58
|||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGATCTGTTGAGAGAATTCGAAAGAAAAACTCAAATGCAAAGCCATCAGAATCGAA 60
Query 59 GCAGGCTGAGCTTAATTCTACGGTCTAGATTCATCCCTTCCTTCTCTTCACCACTCTCCC 118
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAGGCTGAGCTTGATTCTACGGTCTAGATTCATCCCTTCCTTCTCTTCACCACTCTCCC 120
Query 119 TCTTCGTCGTCCTCGCTGCCGTTCCTTTTCCGATCTACTTTTCCGGTCTACTCTCCGGCA 178
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TCTTCGTCGTCCTCGCTGCTGTTCCTCTTCCGATCTACTTTTCCGGTCTACTCTCCGGCA 180
Query 179 GAAACAACAAGCCGCTTTCAGTTATGAGACTCAACTCCAACTTAGCTTCTTCAATGGTGG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAACAACAAGCCGCTTTCAGTTATGAGACTCAACTCCAACTTAGCTTCTTCAATGGTGG 240
Query 239 AATCGAATATTTCTTGTACCACTTTCAATATCTTGGCTCCGATTTATAAACGCGTTGATC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATCGAATATTTCTTGTACCACTTTCAATATCTTGGCTCCGATTTATAAACGCGTTGATC 300
Query 299 AAAAGAATCATAGCATTCGAGAGAGCGATTCTC-GCTCGCTTTGGTTAGCTCGTAACCAG 357
||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct 301 AAAAGAATCATAGCACTCGAGAGAGCGATT-TCCGCACGCTTTGGTTAGCTCGTAACCAG 359
Query 358 AGGATTTTAGATTTGCTAATCCATCAACGCTCTTCAGTTATCTGTCTCCAGGAAGTTTGG 417
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGATTTTAGATTTGTTACTCCATCAACGCTCTTCAGTTATCTGTCTCCAGGAAGTTTGG 419
Query 418 GTTGGGAATGAGGAATTAGTCAACATGTACCACGAGCAGCTTGGCA-CTTCAGGCTACAC 476
|||||||||||||||||||| |||||||||||| | |||||| || |||||||||||||
Sbjct 420 GTTGGGAATGAGGAATTAGTGAACATGTACCACCACCAGCTTT-CATCTTCAGGCTACAC 478
Query 477 TATTT-TCCAGTTGGCTAGAACAAACAGTCGTGGTGATGGTCTTTTAACAGCCATACATA 535
||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 TATTTATC-AGTTGGCTAGAACAAACAGTCGTGGTGATGGTCTTTTAACAGCCATTCATA 537
Query 536 AGGACCACTTTAAAGTTGTAAATTACCGGGAGCTGCTCTTTAACGATTTTGGAGACCGTG 595
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGGACCATTTTAAAGTTGTAAATTACCGGGAGCTGCTCTTTAACGATTTTGGAGACCGTG 597
Query 596 TTGCTCAGCTCTTACATGTCAAAACAGTTATTCCCTTTCCGCTTAATGGGAAGCAAGAAG 655
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 598 TTGCTCAGCTCTTACATGTCAAAACAGTTATTCCCTTTCCGCTTAATGGAAAGCAAGACG 657
Query 656 TTCAACAAGAAGTCATTATAGTGAACACTCACCTGTTGTTTCCTCACGATTCTAGTTTGT 715
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 TTCAACAAGAAGTTATTATAGTGAACACTCACCTCTTGTTTCCTCACGATTCTAGTTTGT 717
Query 716 CTATTGTAAGACTTCATGAGGTTTACAAAATTCTTGAATATCTGGAAGCTTACCAAAAGG 775
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTATTGTAAGACTGCATCAGGTTTACAAAATTCTTGAATATCTGGAAGCTTACCAAAAGG 777
Query 776 AAATTAAACTTAATCACATGCCCATTATTCTCTGCGGTGACTGGAATGGAAGCAAACGCG 835
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAAATAAACTTAATCACATGCCCATTATTCTCTGCGGTGACTGGAATGGAAGCAAACGCG 837
Query 836 GGCATGTCTACAAATTCTTGAGATCTCAAGGGTTCATATCATCATACGATGATGCTCACC 895
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct 838 GGCATGTCTACAAATTTTTGAGATCTCAAGGGTTTATTTCATCATACGATGATGCTCATC 897
Query 896 AGTATACCGACAGTGATGCTCATAGGTGGGTTAGCCACAGAAACCACAGGGGAAATATAT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 AGTATACCGACAGTGATGCTCATAGGTGGGTTAGCCACAGAAACCACAGGGGAAATATTT 957
Query 956 GCGGAGTTGATTTCATATGGCTCTGTAACCCTAGCGATTCAAGAAAACCATTGAGAACAA 1015
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 958 GCGGAGTTGATTTCATATGGCTCTGTAACCCTAGTGATTCAAGAAAACCATTGAGAACAA 1017
Query 1016 GTTGGGTGGAAGCTGTTTTCAGCATTATCAAGTATCAACTCCACAAAGCTTCCATAGCCG 1075
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1018 GTTGGGTGGAAGCTGTTTTCAGCATTATCAAGTATCAACTACACAAAGCTTCCATAGCCG 1077
Query 1076 AGGACGATGTATTTGCTTTTCTTGGGGCAAATAATCACAGTGATTCACTCACCTACTCTG 1135
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1078 AGGACGATGCCTTTACTTTTCTTGGGGCAAAAAATCACAGTGATTCACTAACCTACTCTG 1137
Query 1136 ACTTTTGCCTAGCACTTCAAAAGGTAAATCTAACAGGTATTCCGCATGGACTTAGCTTCG 1195
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1138 ACTTTTGCCTAGCACTTCAAAAGGTAAATCTAACGGGTATTCCACATGGACTTAGCTTCG 1197
Query 1196 AAGAGACAAAAGAGCTATGGGTTCGAGCTGATCTTGATGGAAATGGTGTCTTCGACTATG 1255
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAGAGACAAAAGAGCTATGGGTCCGAGCTGATCTTGATGGAAATGGTGTCTTCGACTATG 1257
Query 1256 AAGAACTTAAGAAAATTTGGAACATGACGATGGTAAATCAACCTGGAAACTGCAAAGAGA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AAGAACTTAAGAAAATTTGGAACATGACGATGGTAAATCAACCTGGAAACTGCAAAGAGA 1317
Query 1316 GTGTGATGGAGAGTGACAAAGATGAAGGAGATGATGAAGCAATCGGATTGAAAGTGAATA 1375
|||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1318 GTGTGATGGAGAGTAAGAAAGAAGAAGGAGAAGATGAAGCAATCGGATTGAAAGTGAATA 1377
Query 1376 AAGCTGTATTGTATCCACAAGAAGCAGAGAAAGGATTGTGGCCGGAGAATTACAATCTGT 1435
|||| | |||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1378 AAGCAATTTTGTTTCCACAAGAAGCAGAGAAAGGATTGTGGCCGGAGAATTACAATATAT 1437
Query 1436 CCGATCATGCTTGCCTCACCGTACAATTCTCGCCGGTCAAAATGCTATGCAGCTAAGTTT 1495
||||||||||||| ||||||||||||||||| || ||||||||||| || |||||| |||
Sbjct 1438 CCGATCATGCTTGTCTCACCGTACAATTCTCTCCAGTCAAAATGCTTTGTAGCTAAATTT 1497
Query 1496 TGTTTAAT-ATGGCTCTTGTAATTGTAAAGAAGCAATGAGATTGAGATTTGCAATGAGA 1553
|||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1498 TGTTTAATTACGGCTCTTGTAAATGTAAAGAAGCAATGAGATTGAGATTTGCAATGAGA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5