BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470192
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02310.1 | Symbols: MAN1 | Glycosyl hydrolase superfamily pr... 2017 0.0
> AT1G02310.1 | Symbols: MAN1 | Glycosyl hydrolase superfamily
protein | chr1:458133-460696 REVERSE LENGTH=1390
Length=1390
Score = 2017 bits (1092), Expect = 0.0
Identities = 1305/1402 (93%), Gaps = 37/1402 (3%)
Strand=Plus/Plus
Query 1 ATGTTGTGTCATTCTCTTTTCTTCAAGTCGGCAAACGTTTCACAAATCACAATGTTAAAC 60
||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1 ATGTTGTGTCATTCTCTTTTCTTCAAGTCGGCAAAAG--T-----ATCACAATGTTAAAC 53
Query 61 ATCTTGCTGtttttctttttctttcttcCGTTTCTCATCGGAAACAACCGCATTTGCGTC 120
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 ATCTTACCGTTTTTCTTGTTCTTTCTTCCGTTTCTCATCGGAAACAACCGCATTTGCGTC 113
Query 121 GCCGCAAATACAGG-TTTCGTCGGGAGAAACGGCACGCAGTTCGTGTTGAACGGAGAACA 179
|||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GCCGTAAAGACAGGCTTT-GTCGGGAGAAACGGCACGCAGTTCGTGTTGAACGGAGAACA 172
Query 180 AGTTTACTTAAACGGCTTCAATGCTTATTGGATGATGACCACCGCGGCTGATACGGCGTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 173 AGTTTACTTAAACGGCTTCAATGCTTATTGGATGATGACCACCGCGGCTGACACGGCATC 232
Query 240 TAAAGGAAGAGGTACTGTCACGACGGCGCTCCGGCAAGCATCTGCCGTGGGAATGAACGT 299
||||||||||| ||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 233 TAAAGGAAGAGCTACCGTCACGACGGCGCTCCGGCAAGCCTCCGCGGTGGGAATGAACGT 292
Query 300 CGCTAGGATTTGGGGTTTCAACGAAGGAGACTACATTCCTCTTCAGATCTCTCCTGGCTC 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 293 CGCTAGGATTTGGGGTTTCAACGAAGGAGATTACATTCCTCTTCAGATCTCTCCTGGCTC 352
Query 360 CTATAGTGAAGACGTTTTCAAGGGGCTAGACTTTGTCGTCTATGAAGCTGGAAGGTTTAA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 353 CTATAGTGAAGACGTTTTCAAGGGGCTAGACTTTGTCGTCTATGAAGCTGGACGATTTAA 412
Query 420 AATTAAACTGATAATTAGTTTAGTCAATAATTACGAAGACTATGGAGGGAGAAAAAAGTA 479
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 413 TATTAAATTGATAATTAGTTTAGTCAATAATTTCGAAGACTATGGAGGGAGAAAAAAGTA 472
Query 480 TGTGGAATGGGCCGGTTTAGATGAACCGGATGAATTCTATACAAACTCAGCTGTCAAGCA 539
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 473 CGTGGAATGGGCCGGTTTAGATGAACCGGATGAATTCTACACAAACTCAGCTGTCAAGCA 532
Query 540 ATTCTACAAGAACCACGTGAAGACCGTGTTGACGAGGAAAAATACAATCACTGGTCGAAT 599
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 533 ATTCTACAAGAATCACGTGAAGACCGTGTTGACGAGGAAAAACACAATCACTGGTCGAAT 592
Query 600 GTACAAAGACGACCCAACCATCTTCTCATGGGAACTCATCAATGAGCCTCGCTGCAATG- 658
||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 593 GTACAAAGATGACCCTACCATCTTCTCATGGGAACTCATCAACGAACCTCGCTGCAATGA 652
Query 659 -T-CACTGGTTCGAATATTCTACAGAATTGGGTGAAGGAAATGGCTAGTTATGTTAAGTC 716
| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 653 TTCCACTGCTTCGAATATTCTTCAGGATTGGGTGAAGGAAATGGCTAGTTATGTTAAGTC 712
Query 717 CATAGACTCAATCCATCTACTGGAAATAGGGCTTGAAGGGTTTTACGGAGAATCTTTACC 776
||||||||||| |||| | ||||||||||||||||||||||| |||||||||||| ||||
Sbjct 713 CATAGACTCAAACCATTTGCTGGAAATAGGGCTTGAAGGGTTCTACGGAGAATCTATACC 772
Query 777 GGAAAGAACGGTTTACAATCCCGGCGGGAGGGTCTTAACCGGTACAGATTTCATCTCCAA 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 773 GGAAAGAACGGTTTACAATCCCGGCGGAAGGGTCTTAACCGGTACAGATTTCATCACCAA 832
Query 837 TAACCAAATTCCCGATATCGATTTCGCCACTATCCATATCTACCCGGATTCTTGGCTACC 896
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TAACCAAATTCCGGATATCGATTTCGCCACTATCCATATCTACCCGGATTCTTGGCTACC 892
Query 897 ATTACAGAGCTCAAGAACAGGAGAACAAGATACATTTGTGGACAGATGGATCGGATCACA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 893 ATTACAGAGCTCAAGAACAGGAGAACAAGATACATTTGTGGACAGATGGATCGGAGCACA 952
Query 957 TATTGAAGACTGTAACAATATCATCATGAAGCCTTTACTGATAACAGAGTTTGGGAAATC 1016
||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 953 TATTGAAGACTGTGACAATATCATCAAGAAGCCTTTGCTGATAACAGAGTTTGGGAAATC 1012
Query 1017 TTCAAAGTATCCTGGTTTCAGCTTAGAGAAACGGAACAAGTTTTTC-AAGAGAGTTTATG 1075
||||||||| |||||||| ||||||||||||||||||||||||||| || |||||||| |
Sbjct 1013 TTCAAAGTACCCTGGTTTTAGCTTAGAGAAACGGAACAAGTTTTTCCAA-AGAGTTTACG 1071
Query 1076 ATGTCATCTACAACAGTGCAAGAACCGGTGGTTCGTGTACTGGTGGAGTTTTCTGGCAGC 1135
|||| |||||| |||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 1072 ATGTTATCTACGACAGTGCAAGGGCTGGTGGTTCGTGTACTGGTGGTGTTTTCTGGCAGC 1131
Query 1136 TTACAACCAATAGAACTGGTCTGTTAGGTGATGGGTACGAGGTTTTTATGCAAGCAGGTC 1195
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1132 TTACGACCAATAGAACTGGTCTGTTAGGTGATGGGTACGAGGTCTTTATGCAAGCAGGTC 1191
Query 1196 CTAATACTACTGCTCAGCTTATCGCCGAGCAATCTAGTAAACTGAGAAACCTCAAGTATC 1255
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1192 CTAATACTACTGCTCAGCTTATCGCCGACCAATCTAGTAAACTGAAAAACCTCAAGTATC 1251
Query 1256 CACCATTGGTCACACATAGTGCAGAATGAAACAGTATAGATACaaa-a--a-a-a--aG- 1307
|||| ||||||||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 1252 CACCGTTGGTCACACATAGTGCAGAATGAAACAGTATAGATACAAACAGTAGATATTAGA 1311
Query 1308 --G-AAACATAT-AAA-AT--A--G---AATATGAACAGAAGCTAAATGCTAGTATATAG 1355
| ||| ||| ||| || | | |||||||||| |||||||||| | ||| |||
Sbjct 1312 ATGTAAAAATAGGAAACATGTATAGTTGAATATGAACAAAAGCTAAATG--A-TATGTAG 1368
Query 1356 AATAGTTGAATGTCTTTTGATT 1377
||||||||||||||||||||||
Sbjct 1369 AATAGTTGAATGTCTTTTGATT 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5