BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470194
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02335.1 | Symbols: GL22 | germin-like protein subfamily 2 m... 1136 0.0
> AT1G02335.1 | Symbols: GL22 | germin-like protein subfamily 2
member 2 precursor | chr1:463855-464924 REVERSE LENGTH=832
Length=832
Score = 1136 bits (615), Expect = 0.0
Identities = 768/840 (91%), Gaps = 17/840 (2%)
Strand=Plus/Plus
Query 1 ATAGTTAAATAAAATCCATCTTTTCAC-GA-ATATTTAATTTGGAGCCATGATGAATTTG 58
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATAGTTAAATAAAATTCATCTTTTCACGGATATATTTAATTTGGAGCCATGATGAATTCA 60
Query 59 AGAATTTCTATTATCATTGTGTTATCTTGCA-T-T-ATCACTTCAACTCGTGCATACGAT 115
||||||||||||||||||| ||||||||||| | | |||||||||| |||||||||||||
Sbjct 61 AGAATTTCTATTATCATTGCGTTATCTTGCATTATGATCACTTCAATTCGTGCATACGAT 120
Query 116 CCCGACGCTCTTCAAGATCTCTGCGTTGCCGATAAATCTCACGGAACCAAACTGAATGGA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCGACGCTCTTCAAGATCTCTGCGTTGCCGATAAATCTCACGGAACCAAACTGAATGGA 180
Query 176 TTCCCATGCAAGGAAACATCAAACATCACGGCGTCCGACTTCTTCTTCGCCGGAATCTCA 235
|| || ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TTTCCGTGCAAGGAAACATTAAACATCACGGAGTCCGACTTCTTCTTCGCCGGAATCTCA 240
Query 236 AAACCGGCCGTCATAAACTCTACGATGGGTTCCGCCGTGACAGGAGCCAACGTGGAGAAG 295
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 241 AAACCCGCCGTCATAAACTCTACGATGGGTTCGGCCGTAACAGGAGCCAACGTGGAAAAG 300
Query 296 ATCCCAGGCCTCAACACTCTCTCCGTCTCCTTAGCACGTATAGACTACGCGCCGGGTGGT 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ATCCCAGGCCTCAACACTCTCTCCGTCTCCTTAGCACGTATAGACTACGCGCCGGGAGGT 360
Query 356 TTAAACCCACCGCACACTCACCCACGCGCCACCGAAGTCGTCTACCTCCTCGAAGGAGAG 415
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 361 TTAAACCCACCGCACACTCACCCACGCGCCACCGAAGTCGTCTACGTTCTAGAAGGAGAG 420
Query 416 CTCGAAGTTGGATTTATCACGACGGCGAATAAGCTTTTCTCTAAAACCATAAAGATTGGT 475
|| || |||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 421 CTTGAGGTTGGATTTATCACAACAGCGAATAAGCTTTTCACTAAAACCATAAAGATTGGT 480
Query 476 GAAGTTTTCGTTTTTCCAAGAGGGCTTGTGCATTTTCAGAAGAACAATGGGAAATCTCCG 535
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 GAAGTTTTCGTTTTTCCAAGAGGGCTTGTGCATTTTCAAAAGAACAATGGGAAATCTCCC 540
Query 536 GCTTCTGTTCTGTCCGCGTTTAATAGTCAGTTGCCCGGAACGGTTTCCGTTGCGGCAACC 595
|| || ||| |||| || ||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 541 GCGTCGGTTTTGTCGGCATTTAATAGTCAGTTGCCGGGAACGGCTTCTGTTGCGGCAACC 600
Query 596 CTATTTGCGGCGGAGCCTGCTTTGCCGGAAGATGTGTTGACTAAGACTTTTCAGGTGGGA 655
||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 601 CTATTTGCGGCAGAGCCGGCTTTGCCGGAAGATGTGTTAACTAAGACTTTTCAAGTGGGA 660
Query 656 TCTAAGATGGTTGATAAGATTAAGGAAAGGCTTGCGACTAAAAAATAATTCTTGAAAGTT 715
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 661 TCTAAGATGGTTGATAAGATTAAGGAAAGGCTTGCCACTAAAAAATAATTCATAAAAGTT 720
Query 716 TATCAAACAAATAAAA-CATGAATATGTTATGATGAGAGAAACCTAGAAAGGTTATCTTT 774
|| ||| |||||||| |||||| || | ||| | | | |||||||||| || | |||
Sbjct 721 TAAAAAAAAAATAAAAACATGAAAATATAATG-TAACCGTTACCTAGAAAGATTTTATTT 779
Query 775 AACACTACTGTAATTGACaaaaaaaaaGAAGAAGGTATTACTGTGATTATCTTGTTGATG 834
|||||||||||| |||| | ||||| | | | | | |||||||||||||||||||||
Sbjct 780 AACACTACTGTA-TTGA-ATAAAAA--G--GT-G-T-T-ACTGTGATTATCTTGTTGATG 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5