BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470196
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2399 0.0
> AT1G02370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:474500-476511 FORWARD LENGTH=1758
Length=1758
Score = 2399 bits (1299), Expect = 0.0
Identities = 1481/1569 (94%), Gaps = 11/1569 (1%)
Strand=Plus/Plus
Query 76 CTCCGGCGTCGGCGACTGGCGTCGTCGAAGCCTCTGTTTCTTCTCCAGCGGCGGCGAATG 135
|||| ||| |||||| | |||||||||||||||||||||||||| ||||||| |||||
Sbjct 126 CTCCAGCGGCGGCGAAT---GTCGTCGAAGCCTCTGTTTCTTCTCCGGCGGCGGAGAATG 182
Query 136 GCGTC-GAAGCCTCTGTTCCTGCTCCGACGGCGGCGTCAAGGCAGCGAGAGTTGTACAAG 194
||||| ||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||
Sbjct 183 GCGTCAGAA-CCTCTGTTGCTGCTCCGACGGTGGCTTCAAGGCAGCGAGAGTTGTACAAG 241
Query 195 AAACTGTCTAAGCTTAGTGTGGCGGGAGGGACAGTGGCAGAGACGTTAAATCAGTTCATC 254
||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 242 AAACTTTCTATGCTTAGTGTGACGGGAGGAACAGTGGCAGAGACGTTAAATCAGTTCATC 301
Query 255 ATGGAGGGTATTACGGTCAGAAAAGTCGATCTCTTTCGCTGTGCTAAGGA-CCTTCGCAA 313
|||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||
Sbjct 302 ATGGAGGGTATTACTGTCAGAAAAGACGATCTCTTTCGCTGTGCTAA-AACCCTTCGCAA 360
Query 314 ATTCCGTCGACATCAACACGCTCTTGAGATCTTTGATTGGATGGAGAAGAGGAAAATGAC 373
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTCCGTCGACCTCAACACGCTTTTGAGATCTTTGATTGGATGGAGAAGAGGAAAATGAC 420
Query 374 ATTTTCTGTCTCTGATCATGCAATTCGTTTGGATCTAATTGCAAAGGCTAAAGGCCTAGA 433
||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||| ||||
Sbjct 421 ATTTTCTGTGTCTGATCATGCAATTTGTTTGGATCTAATTGGAAAGACTAAAGGTTTAGA 480
Query 434 AGCAGCTGAGAACTA-TTTCAACAACTTAGATCCTTCTGCAAAGAATCATCAGTCGACTT 492
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCAGCTGAGAACTACTTT-AACAACTTAGATCCTTCTGCAAAGAATCATCAGTCGACTT 539
Query 493 ACGGGGCGCTCATGAACTGTTACTGTGTGGAACTTGAGGAAGAGAAAGCAAAGGCTCATT 552
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 ATGGGGCGCTCATGAACTGTTACTGTGTTGAACTTGAGGAAGAGAAAGCAAAGGCTCATT 599
Query 553 TTGAGATAATGGATGAGCTCAACTTTGTTAACAATTCGTTACCGTTTAATAACATGATGT 612
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGAGATAATGGATGAGCTTAACTTTGTTAACAATTCGTTACCGTTTAATAACATGATGT 659
Query 613 CTATGTACATGAGGTTGAGTCAACCTGAGAAGGTACCTGTTTTGGTTGATGCGATGAAGC 672
||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 660 CTATGTACATGCGGTTGAGTCAACCGGAGAAGGTACCTGTGTTGGTTGATGCGATGAAAC 719
Query 673 AGAGGGGTATATCTCCTTGTGGGGTAACTTACTCTATATGGATGCAGAGCTGTGGAAGTT 732
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 720 AGAGGGGTATATCTCCTTGTGGTGTCACTTACTCTATATGGATGCAGAGCTGTGGAAGTT 779
Query 733 TGAATGACTTAGATGGATTAGAGAAGATTATTGATGAAATGGGCAAAGACAGTGAAGCTA 792
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 780 TGAATGACTTAGATGGATTAGAGAAGATTATAGATGAGATGGGGAAAGACAGTGAAGCTA 839
Query 793 AAACCACTTGGAATACTTTCTCTAATCTAGCAGCAATCTTCACTAAAGCTGGTCTTTACG 852
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||
Sbjct 840 AAACCACTTGGAATACTTTCTCTAATCTGGCTGCAATCTACACTAAAGCTGGTCTTTACG 899
Query 853 AGAAGGCGGAATCTGCGCTGAAATCTATGGAGGAGAAGATGAACCCTAACAACCGTGATT 912
|||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 900 AGAAGGCGGATTCTGCACTGAAATCTATGGAGGAGAAAATGAATCCTAACAACCGTGATT 959
Query 913 CCCACCATTTTCTCATTAGTTTGTACGCTGGAATCTCGAAAGCTCCTGAGGTTTATAGAG 972
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 960 CCCACCATTTTCTCATGAGTTTGTACGCTGGAATCTCGAAAGGTCCTGAGGTTTATAGGG 1019
Query 973 TTTGGGAATCGCTGAAGAAGGCTCGTCCTGAGGTCAACAACTTGAGCTATCTTGTCATGT 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 TTTGGGAATCGCTGAAGAAGGCTCGTCCTGAGGTCAACAACTTGAGCTATCTAGTCATGT 1079
Query 1033 TACAAGCAATGAGTAAACTCGGCGACATAGATGGGATTAAGAAGATTTTCACAGAGTGGG 1092
||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 TACAAGCGATGAGTAAACTAGGCGACTTAGATGGGATTAAGAAGATTTTCACAGAGTGGG 1139
Query 1093 AATCAAAATGCTGGGCATACGATATGAGGCTGGCTAATATCGCGATCAACACGTATTTAA 1152
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1140 AATCGAAATGCTGGGCTTACGATATGAGGCTGGCTAATATCGCGATTAACACGTATTTGA 1199
Query 1153 AAGGGAATATGTATGAAGAAGCAGAGAAGATTCTTGATGGTGCCATGGAAAAGTCTAAAG 1212
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1200 AAGGGAATATGTATGAAGAAGCAGAGAAGATTCTTGATGGTGCCATGAAAAAGTCTAAAG 1259
Query 1213 GACCTTTCTCCAAAGCGAGACAGCTTCTGATGATCCATCTGTTAGAGAATGGTAAAGCGG 1272
| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 1260 GTCCTTTCTCCAAAGCGAGACAGCTTCTGATGATCCATCTGTTGGAGAACGATAAAGCGG 1319
Query 1273 ATTTGGCTATGAAGCATTTGGAAGCAGCAGTTTCTGATTCCGCAGAGAACAAAGGCGAAT 1332
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 1320 ATTTGGCTATGAAGCATTTGGAAGCAGCGGTTTCTGATTCTGCAGAGAACAAAGACGAAT 1379
Query 1333 GGAGCTGGAGCTCAGAGCTAGTCAGCTTGTTTTTCCTTAACTTTGAGAGAGCTAAAGATG 1392
|| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||
Sbjct 1380 GGGGCTGGAGCTCAGAGCTGGTCAGCTTGTTTTTCCTTCACTTTGAGAAAGCTAAAGATG 1439
Query 1393 TTGATGGAGCAGAAGATTTCTGCAAGATTTTGTCAAATTGGAAACCTCTTGATTCTGAAA 1452
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1440 TTGATGGAGCGGAAGATTTCTGCAAGATTTTGTCGAATTGGAAACCTCTTGATTCTGAAA 1499
Query 1453 CTATGAGC-TTTCTCATAAAGACTTATGCAGCCGCAGAGAAAACTTGTCCTGATATGCGA 1511
|||||| | ||||||||||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 1500 CTATGA-CATTTCTCATAAAGACTTATGCAGCAGCAGAGAAGACTAGTCCTGATATGCGA 1558
Query 1512 GAGAGATTGTCTCAACACCAGATCGAAGTAAGCGAGGAGATCCAAGACTTGCTTAAAACA 1571
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GAGAGATTGTCTCAACAGCAGATCGAAGTAAGCGAGGAGATCCAAGACTTGCTTAAAACA 1618
Query 1572 GTTTGTCCCTAAACTAAGTAATAATTGTTATTTGAACATTATGTTTAAACTTGTGTCTCG 1631
|||||||||||||||||||||||| ||| ||| | || ||||||||||||||||||| ||
Sbjct 1619 GTTTGTCCCTAAACTAAGTAATAAATGTGATTAGCACGTTATGTTTAAACTTGTGTCCCG 1678
Query 1632 TTTAGAGTT 1640
|||||||||
Sbjct 1679 TTTAGAGTT 1687
Score = 255 bits (138), Expect = 7e-67
Identities = 158/168 (94%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 1 CAACCAAAATGAATTTCCGTAATCTGATTACTTCCGGTTCTCGCCTCGGCAAGAGATTCT 60
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 9 CAACAAAAATGAATTTCCGTAATCTGATTGCTTCCGGTTCTCGCCTCGGCAAGAGGTTCT 68
Query 61 GTGCAACAGTCTTTGCTCCGGCGTCGGCGACTGGCGTCGTCGAAGCCTCTGTTTCTTCTC 120
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 69 GTGCAACGGTATTTGCTCCGGCGTCGGCGACTGGCATCGTCGAAGCCTCTGTTTCTTCTC 128
Query 121 CAGCGGCGGCGAATGGCGTCGAAGCCTCTGTTCCTGCTCCGACGGCGG 168
||||||||||||||| |||||||||||||||| || ||||| ||||||
Sbjct 129 CAGCGGCGGCGAATGTCGTCGAAGCCTCTGTTTCTTCTCCGGCGGCGG 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5