BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470198
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02390.1 | Symbols: ATGPAT2, GPAT2 | glycerol-3-phosphate ac... 2532 0.0
> AT1G02390.1 | Symbols: ATGPAT2, GPAT2 | glycerol-3-phosphate
acyltransferase 2 | chr1:480852-483292 FORWARD LENGTH=1791
Length=1791
Score = 2532 bits (1371), Expect = 0.0
Identities = 1669/1808 (92%), Gaps = 40/1808 (2%)
Strand=Plus/Plus
Query 1 TCGACATGCAGAGTCTAGAATCCAGTGACGCCATATACTATAGTAATTGGAAAACGAGAG 60
||||||||||||||||||| ||||| ||| ||||||| |||||| ||| |||||||||||
Sbjct 1 TCGACATGCAGAGTCTAGATTCCAGCGACACCATATAATATAGTTATTAGAAAACGAGAG 60
Query 61 GTCAGAACCATGTCCGGTAATAAGATCTCGACTCTTCAAGCTCTTGTCTTCTTCTTGTAC 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCAAAACCATGTCCGGTAATAAGATCTCGACTCTTCAAGCTCTTGTCTTCTTCTTGTAC 120
Query 121 CGGTTTTTCATTCTCCGTCGTTGGTGTCATCGTAACCCTAAACAAAAATTCCAAAAATGC 180
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 121 CGGTTTTTCATTCTCCGTCGTTGGTGTCATCGTAGCCCTAAACAAAAATACCAAAAATGC 180
Query 181 CTTTCTCACGGCCTCCACCAAGCTCAAGACCTATCGAATCACACTTTGATATTCAACGTC 240
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTTCTCACGGCCTCCACCAATATCAAGACCTATCGAATCACACTTTGATATTCAACGTC 240
Query 241 GAAGGAACTCTACTCAAATCAAACTCTTTATTCCCTTACTTCATGGTTGTAGCTTTCGAA 300
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 GAAGGAGCTCTACTCAAATCAAACTCTTTATTCCCTTACTTCATGGTTGTGGCATTCGAA 300
Query 301 GCCGGAGGGGTAATAAGGTCACTTTTCCTCTTCGTTCTGTATCCATTTATAAGCTTAATG 360
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 301 GCCGGAGGGGTGATAAGGTCACTTTTCCTCTTAGTTCTTTATCCATTTATAAGCTTGATG 360
Query 361 AGCTACGAAATGGGTTTGAAGACGATGGTGCTGTTGAGCTTCTTCGGAGTTAAAAAGGAA 420
|||||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||
Sbjct 361 AGCTACGAAATGGGCTTGAAGACGATGGTGATGCTGAGCTTCTTTGGAGTTAAAAAGGAA 420
Query 421 AGTTTTCGAGCCGGGAAAGCAGTTTTGCCTAAGTATTTTCTAGAAGATGTTGGGCTCGAG 480
|| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGCTTCCGAGTGGGGAAATCAGTTTTGCCTAAGTATTTTCTAGAAGATGTTGGGCTCGAG 480
Query 481 ATGTTCCAGGTTTTGAAAAGAGGAGGCAAGAGAGTTGGTGTGAGTGATTTACCACAAGTT 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 ATGTTCCAGGTTTTGAAAAGAGGAGGCAAGAGAGTTGCTGTGAGTGATTTACCACAAGTT 540
Query 541 ATGATTGATGTGTTCTTGAGAGATTATTTGGAGATTGAAGTTGTGGTCGGAAGAGACATG 600
||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 541 ATGATTGATGTATTCTTGCGAGATTACTTGGAGATAGAAGTTGTGGTCGGAAGAGACATG 600
Query 601 AAAATGGTCGGTGGATACTACGTAGGCATCATGGAGGATAAGAAGAAACGTGAGTTTGCT 660
|||||||||||||| |||||| |||||||| |||||||||||||||| | ||| |||||
Sbjct 601 AAAATGGTCGGTGGTTACTACCTAGGCATCGTGGAGGATAAGAAGAACCTTGAAATTGCT 660
Query 661 TTTGATAAAGTGGTTCAAGAAGAAAGGCTTAGCAGTGGTCGTC-T-T-ATTGGCATCACT 717
|||||||||||||||||||||||||| ||| | |||||||||| | | ||||||||||||
Sbjct 661 TTTGATAAAGTGGTTCAAGAAGAAAGACTTGGTAGTGGTCGTCGTCTTATTGGCATCACT 720
Query 718 TCCTTCAACTCGCCAAGTCACAGATCTCTATTCTCTCAAATTTGCCAGGAGATTTACTTC 777
||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 721 TCCTTTAACTCGCCAAGTCACAGATCTCTCTTCTCTCAATTTTGCCAGGAAATTTACTTC 780
Query 778 GTCAGAAATTCAGACAAGAAAAGTTGGCGAATCCTACCACGAGATCAATACCCTAAACCA 837
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 781 GTCAGAAATTCAGACAAGAAAAGTTGGCAAACCCTACCACAAGATCAATACCCTAAACCA 840
Query 838 TTGATTTTCCACGATGGTCGTTTAGC-GATCAAGCCAACACCTTTAAACACATTCGTATT 896
|||||||||||||||||||||||||| | | ||||||||||||||||||||| |||||||
Sbjct 841 TTGATTTTCCACGATGGTCGTTTAGCCGTT-AAGCCAACACCTTTAAACACACTCGTATT 899
Query 897 ATTCATGTGGGCCCCATTCGCCACAGCCTTAGCCGCTGCAAGACTCGTCTTCGGCCTAAA 956
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 900 ATTCATGTGGGCCCCATTCGCCGCCGTCTTAGCCGCTGCAAGACTCGTCTTCGGCCTAAA 959
Query 957 CCTACCTTACTCCCTAGCCAATCCTTTCCTCGCCTTTTCCGGTATCCACCTTACTCTCAC 1016
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 CTTACCTTACTCCCTAGCCAATCCCTTCCTCGCCTTTTCCGGTATCCACCTTACTCTCAC 1019
Query 1017 CGTTAA-A--------GACCTAAT-TACTTCCGATC-GTAAAAA-AGGTTGTCTCTTTGT 1064
|| || | |||||||| | | |||| | | ||||| |||||||||||||||
Sbjct 1020 TGTCAACAACCACAACGACCTAATATCCG-CCGA-CAG-AAAAAGAGGTTGTCTCTTTGT 1076
Query 1065 GTGCAACCATAGAACGTTACTAGACCCACTTTACATTTCATACGCTCTAAGAAAGAAAAA 1124
||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTGTAACCATAGAACGTTATTGGACCCACTTTACATTTCATACGCTCTAAGAAAGAAAAA 1136
Query 1125 CATCAAAGCCGTTACATATAGTCTAAGCAGATTATCTGAGCTTCTAGCTCCGATCAAGAC 1184
||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 CATGAAAGCCGTGACGTATAGTCTAAGCAGATTATCTGAGCTTCTGGCTCCGATCAAGAC 1196
Query 1185 CGTTAGATTGACTCGTGATCGGGTCAAAGATGGTGAAGCCATGGAGAGATTGTTGAGCCA 1244
||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||
Sbjct 1197 CGTTAGATTGACTCGTGATCGAGTCAAAGATGGTCAAGCCATGGAGAAATTGCTGAGCCA 1256
Query 1245 AGGAGATCTCGTGGTTTGTCCGGAAGGGACTACGTGTAGAGAGCCTTACTTGCTTCGGTT 1304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GGGAGATCTCGTGGTTTGTCCGGAAGGGACTACGTGTAGAGAGCCTTACTTGCTTCGGTT 1316
Query 1305 TAGTCCACTTTTCTCCGAGGTTTGTGACGTCATTGTACCTGTTGCTATTGACTCACACGT 1364
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 TAGTCCACTTTTCTCTGAGGTTTGTGACGTCATCGTACCTGTTGCTATTGACTCACACGT 1376
Query 1365 GACTTTTTTCTATGGCACGACGGCTAGTGGTCTTAAGGCCTTTGATCCCATTTTCTTCCT 1424
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1377 GACTTTCTTCTATGGCACGACGGCTAGTGGTCTTAAGGCATTTGATCCCATTTTCTTCCT 1436
Query 1425 TTTGAATCCTTTTCCTTCCTACACCGTCCAATTGCTTGACCCTGTCTCTGGAAGTA-CAT 1483
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1437 TTTGAATCCTTTCCCTTCCTACACCGTCAAATTGCTTGACCCTGTCTCTGGAAGTAGC-T 1495
Query 1484 CGTCCACGTGTCCAG-A-TCC-TGATAATAGAAAAGCGAAGTTCGATGTGGCTAATCACG 1540
|||||||||||| || | ||| ||| ||| |||||| || ||||| |||||||||||||
Sbjct 1496 CGTCCACGTGTCGAGGAGTCCCTGACAATGGAAAAGTTAACTTCGAGGTGGCTAATCACG 1555
Query 1541 TGCAGCATGAGATTGGGAATGCGTTGGGGTTCGAGTGCACCAACCTCACGAGAAGAGATA 1600
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1556 TGCAGCATGAGATCGGGAATGCGTTGGGGTTTGAGTGCACCAACCTCACGAGAAGAGATA 1615
Query 1601 AGTACTTGATCTTGGCCGGTAATAACGGAGTTGTCAAGAAAAAATAAT-Gattttgaatt 1659
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1616 AGTACTTGATCTTGGCCGGTAATAACGGAGTTGTCAAGAAAAAATAATTGATTT-GAGTA 1674
Query 1660 tttttgtttgttttcttaattagggcctttttgtgtgacgtaccaatttgttttATCTCT 1719
|||| ||||||||||||||||||||||||||||||||| | ||| ||| || |
Sbjct 1675 -----GTTTATTTTCTTAATTAGGGCCTTTTTGTGTGACGTAC-ACTTTATTT---CT-T 1724
Query 1720 TATAAGAAACTTTT-CTATGATGTAACTATCttttttt-GTTAAATGTAATTATCTTTTT 1777
|||||| |||| |||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1725 -ATAAGATTTTTTTTCTATGATGTATCTATCTTTTTTTAGTTAAATGTAATTATCTAATT 1783
Query 1778 GTGTGACC 1785
||||||||
Sbjct 1784 GTGTGACC 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88302758655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5