BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470200

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02405.1 | Symbols:  | proline-rich family protein | chr1:48...   431    3e-120


> AT1G02405.1 | Symbols:  | proline-rich family protein | chr1:489979-490505 
REVERSE LENGTH=527
Length=527

 Score =  431 bits (233),  Expect = 3e-120
 Identities = 388/457 (85%), Gaps = 34/457 (7%)
 Strand=Plus/Plus

Query  1    TTACAACATGTCGGCTAAAACTCGCCGTTCGAAGGATCTTGCGGCCACATTCCTCATGGC  60
            ||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct  2    TTACAACATGTCGCCTAAAACTCGCCGATCGACGGATCTTGCGGCCACAATCCTCATGGC  61

Query  61   TATCGTGATCCTCGCATCTCCGATCACAATCAACGCCGAAG-TT-----G---A------  105
            |||||||||||||||||||||||||| |||||||||||||| ||     |   |      
Sbjct  62   TATCGTGATCCTCGCATCTCCGATCATAATCAACGCCGAAGATTCTTCAGCCGAAGTTGA  121

Query  106  CGTTAACTGCACACCTTGTCTCCAAAATCAACCGCCTCCGCC------------ACCTCC  153
            ||||||||||| ||||||||||||||||||||||||||||||            ||||||
Sbjct  122  CGTTAACTGCATACCTTGTCTCCAAAATCAACCGCCTCCGCCTCCGTCTCCGCCACCTCC  181

Query  154  TTCTTGTACACCCGCGCCTCCTCCTCCGTCACCACCACCGCCGAAGAAGTCCTACTGCCC  213
            ||||||||||||| | ||||||||||||||||||||||| |||||||| || | ||| ||
Sbjct  182  TTCTTGTACACCCTCCCCTCCTCCTCCGTCACCACCACCCCCGAAGAAATCTTCCTGTCC  241

Query  214  ACCATCGCCTCTGCCGCCGCCACCACCTCCACCTCCATTTACTTACATATACGCGTATCC  273
            |||||||||||||||||| || |||||||||||||||  || |||| ||| | | |||||
Sbjct  242  ACCATCGCCTCTGCCGCCACCGCCACCTCCACCTCCACCTAATTACGTATTCACATATCC  301

Query  274  GCCGCCGGGAGACTTGTACCACCCTATTGACAATTACTTTGGAGCGGCTGCGGCAGGAGA  333
            ||||  || ||||||||||| |  |||||| ||||||| ||||||||||| ||||| |||
Sbjct  302  GCCG--GG-AGACTTGTACC-C--TATTGAAAATTACTATGGAGCGGCTGTGGCAGTAGA  355

Query  334  AAGCTTCTCGGTGGTGAAGCTGGTCGTGTTTGGAGTTATTGTTTTTATGATTCTTTGATT  393
            |||||| |||||| |||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct  356  AAGCTTTTCGGTGATGAAGCTGTTCGTGTTTGGAGTTATGGTTTTTCTGATTCTTTGATT  415

Query  394  ATGATCACAATTTATTGA-GTTGTTGTTTTTGAACTT  429
            ||||||| || ||||| | ||||||||||| ||||||
Sbjct  416  ATGATCAGAAATTATTTATGTTGTTGTTTTCGAACTT  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5