BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470202
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02420.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2416 0.0
AT1G02430.1 | Symbols: ATARFD1B, ARFD1B | ADP-ribosylation fact... 169 9e-41
> AT1G02420.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:493683-495158 FORWARD LENGTH=1476
Length=1476
Score = 2416 bits (1308), Expect = 0.0
Identities = 1420/1475 (96%), Gaps = 4/1475 (0%)
Strand=Plus/Plus
Query 1 ATGATGATCCTCAAGCCTTTGTCGTCTCAGTGCGCTTCCAATTTCCGTCTCTCTGTATCG 60
|||||||||||||||||||| || ||||| || |||||||||||||||||||||||||
Sbjct 4 ATGATGATCCTCAAGCCTTTATCTTCTCACCACGTTTCCAATTTCCGTCTCTCTGTATCG 63
Query 61 TTTCTTCACAGCGTGGCACTATCGTG-TGCGAAGGTTCCTGTAGAAGAAGAAGATGTTGA 119
|||||||||||||||||||||||| | |||||||||||||||||||||||||| | |||
Sbjct 64 TTTCTTCACAGCGTGGCACTATCG-GATGCGAAGGTTCCTGTAGAAGAAGAAGGCGATGA 122
Query 120 CGCCGAAACTGTTTTCCGGATGATCAATGGATCAAATCTGCAAG-GAGAATTGAAGGAAT 178
||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 123 CGCAGAAACTGTTTTCCGGATGATAAATGGATCAAATCTGCAAGTG-GAATTGAAGGAAT 181
Query 179 CGTTGAGCTCTAGTGGAATCCATTTGTCAAAGGACTTAATCGATAGGGTTTTGAAAAGGG 238
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 182 CGTTGAGCTCTAGTGGAATCCACTTGTCCAAGGACTTAATCGATAGGGTTTTGAAAAGGG 241
Query 239 TAAGGTTTAGTCATGGAAACCCAATTCAAACCCTAGAGTTTTACAGGTACGCTGGTGCTA 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 242 TAAGGTTTAGTCATGGGAACCCAATTCAAACCCTAGAGTTTTACAGGTACGCTAGTGCTA 301
Query 299 GAAGAGGGTTTTACCATTCTTCGTTTTCTCTTGATACAATGCTTTATATTCTCGGTAGAA 358
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 302 TAAGAGGGTTTTATCATTCTTCGTTTTCTCTAGATACAATGCTTTATATTCTCGGTAGAA 361
Query 359 ATCGAAAGTTCGATCAAATTTGGGAGATTTTGATTGAGACTAAGCGAAAGGATCGATCTT 418
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 362 ATCGAAAGTTCGATCAAATTTGGGAGCTTTTGATTGAGACTAAGCGTAAGGATCGATCTT 421
Query 419 TGATATCTCCAAGGACGATGCAAGTTGTGTTAGGTAGAGTTGCTAAGTTGTGTTCCGTTA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGATATCTCCAAGGACGATGCAAGTTGTGTTAGGTAGAGTTGCTAAGTTGTGTTCCGTTA 481
Query 479 GGCAAACTGTTGAGTCTTTCTGGAAGTTTAAGAGATTGGTTCCTGATTTCTTTGATACGG 538
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 482 GACAAACTGTTGAATCTTTCTGGAAGTTTAAGAGATTGGTTCCTGATTTCTTTGACACGG 541
Query 539 CTTGTTTCAATGCTCTCTTGAGAACTCTTTGCCAAGAGAAGAGTATGACTGATGCTAGGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CTTGTTTCAATGCTCTCTTGAGAACTCTTTGCCAAGAGAAGAGTATGACTGATGCTAGGA 601
Query 599 ATGTGTATCATAGCTTGAAGCATCAGTTTCAGCCTGATTTGCATACTTTTAATATACTTT 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 602 ATGTGTATCATAGCTTGAAGCATCAGTTTCAGCCTGATTTGCAGACTTTTAATATACTTT 661
Query 659 TATCGGGTTGGAAATCATCGGAAGAAGCGGAAGCTTTCTTTGAGGAAATGAAGGGAAAGG 718
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 662 TATCGGGTTGGAAATCATCGGAAGAAGCGGAAGCTTTCTTCGAGGAAATGAAGGGAAAGG 721
Query 719 GGCTAAAACCTGATGTGGTGACGTATAACTCTTTGATTGATGTGTATTGCAAGGATAGAG 778
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGCTAAAACCTGATGTGGTTACGTATAACTCTTTGATTGATGTGTATTGCAAGGATAGAG 781
Query 779 AGATTGAGAAAGCTTATAAGTTGATAGATAAGATGCGTGAGGAGGATGAAACTCCGGATG 838
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 782 AGATTGAGAAAGCTTATAAGTTGATAGATAAGATGCGAGAGGAGGAGGAAACTCCCGATG 841
Query 839 TTATAACTTACACAACTATTATAGGCGGTTTGGGGTTGATCGGTCAGCCTGATAAAGCTA 898
|||||||||| |||||| ||||||| || |||||||| ||||||||||||||||||||||
Sbjct 842 TTATAACTTATACAACTGTTATAGGTGGGTTGGGGTTAATCGGTCAGCCTGATAAAGCTA 901
Query 899 GAGAGGTTTTAATGGAAATGAAGGAGTATGGATGTTATCCTGATGTTGCGGCTTATAATG 958
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 902 GAGAAGTTTTAAAGGAAATGAAGGAGTATGGGTGTTATCCTGATGTTGCGGCTTATAATG 961
Query 959 CTGCTATTAGGAATTATTGCATAGCGAGGAGGCTCGGGGATGCGGATAAGTTGGTGGATG 1018
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CTGCTATTAGGAATTTTTGCATAGCGAGGAGGCTCGGGGATGCGGATAAGTTGGTGGATG 1021
Query 1019 AGATGGTGAAGAAGGATTTGTCTCCGAATGCGACTACTTATAATCTGTTTTTCCGTGTTT 1078
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AGATGGTGAAGAAGGGTTTGTCTCCGAATGCGACTACTTATAATCTGTTTTTCCGTGTTT 1081
Query 1079 TATCGTTGGCAAATGATTTGGGAAGGTCTTGGGAGCTGTATGAGAGAATGTTGGGGAACG 1138
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 1082 TATCGTTGGCAAATGATTTGGGACGGTCTTGGGAGCTGTATGTGAGAATGTTGGGGAATG 1141
Query 1139 GGTGTTTGCCGAATACCCAATCCTGTATGTTCTTGATTAAGATGTTTAAGAGACACGAGA 1198
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AGTGTTTGCCGAATACACAATCCTGTATGTTCTTGATTAAGATGTTTAAGAGACACGAGA 1201
Query 1199 AAGTGGATATGGCGATGCGGTTGTGGGAAGATATGGTGGTAAAAGGTTTTGGTTCATATA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AAGTGGATATGGCGATGCGGTTGTGGGAAGATATGGTGGTAAAAGGTTTTGGTTCATATA 1261
Query 1259 GTTTGGTTTCAGATGTGCTTTTGGATTTGCTTTGTGATTTGGCTAAAGTCGAAGAAGCTG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GTTTGGTTTCAGATGTGCTTTTGGATTTGCTTTGTGATTTGGCTAAAGTCGAAGAAGCTG 1321
Query 1319 AGAAATGTTTGCTTGAGATGGTTGAGAAAGGTCATAGACCGAGCAATGTCTCATTTAAAA 1378
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1322 AGAAATGTTTGCTTGAGATGGTTGAGAAAGGTCATAGACCGAGTAATGTCTCGTTTAAAA 1381
Query 1379 GGATAAAGTTGTTGATGGAGCTAGCAAATAAGCATGATGAGGTTAATAACTTGATACAGA 1438
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1382 GGATCAAGTTGTTGATGGAGCTAGCAAATAAGCACGATGAGGTTAATAACTTGATACAAA 1441
Query 1439 AGATGGCTATTTTCGGTACAGAGATTCCGCGATAA 1473
|||||||||||||| |||||||||||||||| |||
Sbjct 1442 AGATGGCTATTTTCAGTACAGAGATTCCGCGTTAA 1476
> AT1G02430.1 | Symbols: ATARFD1B, ARFD1B | ADP-ribosylation factor
D1B | chr1:495050-496062 REVERSE LENGTH=698
Length=698
Score = 169 bits (91), Expect = 9e-41
Identities = 103/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1365 TGTCTCATTTAAAAGGATAAAGTTGTTGATGGAGCTAGCAAATAAGCATGATGAGGTTAA 1424
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 698 TGTCTCGTTTAAAAGGATCAAGTTGTTGATGGAGCTAGCAAATAAGCACGATGAGGTTAA 639
Query 1425 TAACTTGATACAGAAGATGGCTATTTTCGGTACAGAGATTCCGCGATAA 1473
|||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 638 TAACTTGATACAAAAGATGGCTATTTTCAGTACAGAGATTCCGCGTTAA 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5