BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470205

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02450.1 | Symbols: NIMIN1, NIMIN-1 | NIM1-interacting 1 | c...   616    8e-176


> AT1G02450.1 | Symbols: NIMIN1, NIMIN-1 | NIM1-interacting 1 | 
chr1:497976-498516 REVERSE LENGTH=541
Length=541

 Score =  616 bits (333),  Expect = 8e-176
 Identities = 424/465 (91%), Gaps = 17/465 (4%)
 Strand=Plus/Plus

Query  1    TCTTCGCTCTCCAAAATCATTCACTTTCTC--AATGTATCCTAAACAATTTAATTTATAC  58
            ||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||
Sbjct  4    TCTTCACTCTCCAAAATCAATCACTTTCTCTAAATGTATCCTAAACAATTTAGTTTATAC  63

Query  59   AATTACTCCATAGAGACCATGAACAAGGAAGAGAATGTGGAGAGCAAGGAGACGATCAGG  118
            ||||| ||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct  64   AATTATTCCCTAGAGACCATGAGCAAGGATGAGAATGTGGAGAGCAAAGAGACGATCAGG  123

Query  119  GTCGATaagagagtaagagaagacgaagaggaagaagaagagaagaagaTTGATACGTTC  178
            || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  124  GTTGATAAGAGAGTAAGAGAAGACGAAGAAGAGGAAGAAGAGAAGAAGATTGATACGTTC  183

Query  179  TTTAAGCTTATCAAACACTATCAAGAAGCACGAAAACGTAGACGAGAAGAGTTAGCTGAA  238
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  184  TTTAAGCTTATCAAACACTATCAAGAAGCACGGAAACGTAGACGAGAAGAGTTAGCTGAA  243

Query  239  AATTCCGGCGGGGTGAGGAGGAAATCTAACAGCGGAGAAAGATCCGGTCTAGTAGTTCCG  298
            ||||| ||||  |||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct  244  AATTCTGGCGTCGTGAGGAGGAAATCTAACGGCGGAGAAAGGTCCGGTATAGTAGTTCCG  303

Query  299  GCGTTTCAGCCGGAGGATTTCTCTCAGTGTCGTACGGATTTGAAGCCGCCATTGATGATT  358
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct  304  GCGTTTCAGCCGGAGGATTTCTCTCAGTGTCGTACGGGTTTGAAGCCGCCATTGATGTTT  363

Query  359  GTTTCGGATCACaaggaagaagacacaaaggtt-aa-a-gaagaaga--a----gaa-a-  407
            ||||||||||||||||||||| | ||||||||  || | ||||||||  |    ||| | 
Sbjct  364  GTTTCGGATCACAAGGAAGAAAATACAAAGGTGGAACAAGAAGAAGATCAAACAGAAGAG  423

Query  408  c-a---gaagagaagGCTTTAGATCTTAATCTTGCATTGTAGTAG  448
            | |   ||||| |||||||||||||||||||||||||||||||||
Sbjct  424  CGAAACGAAGACAAGGCTTTAGATCTTAATCTTGCATTGTAGTAG  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5