BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470207
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02470.2 | Symbols: | Polyketide cyclase/dehydrase and lipi... 1133 0.0
> AT1G02470.2 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:511765-513611 REVERSE
LENGTH=855
Length=855
Score = 1133 bits (613), Expect = 0.0
Identities = 713/758 (94%), Gaps = 19/758 (3%)
Strand=Plus/Plus
Query 1 GATCAACTCTAAATCTCTTTCTCTCAAGAGCAAAAGAGATGACATCAATAGCTTCTGGTA 60
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 1 GATCAACTCTAAATCTCTTTCTCTCAAGATCAAAAGAGATGTCATCAATAGCTTCTGGCA 60
Query 61 CAGTTCCAACAACCAGATCCAC-CGTTTGTTTCGGAAAAATCCCAAAGTCTGCAACTTTT 119
||||| ||||||||||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct 61 CAGTTTCAACAACCAGATCGACAC-TTTGTTTCAGAAAAATCCCAAAGTCTGCAACTGTT 119
Query 120 TTATCTATGCTTCATCGAGcttcttcttcttcttcttcttctCCAAGAATGTTATTATTG 179
|||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 120 TTATCTATGCTTCATCGA---------TCTTCTTCTTCTTCTCCACGAATGTTATTATTG 170
Query 180 TTGTCTTCTTCTTCCTCATCAGCTAAGTCTGCAAAAATACTAAACTCTAACAATGGTTC- 238
||| ||||| | ||||||||||| ||||||||| |||| |||||||||||||| ||
Sbjct 171 TTG---TCTTC-T--TCATCAGCTAACTCTGCAAAACTACTGAACTCTAACAATGG-TCT 223
Query 239 CTCAATTTCTTCTTCTCCTAAACCCTTCAGACCCGTTATGCAATGGCAAGACGTCACCAG 298
|| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 224 CTTAATTTCCTCTTCTCCTAAACCTTTCAGACCCGTTATGCAATGGCAAGACGTCACCAG 283
Query 299 AGTAAAGATGGTGGTGGATGCACCAGCTTCCGTGGCTTACAAGTTATACGCAGATCGTGA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 284 GGTAAAGATGGTGGTGGATGCACCAGCTTCCGTGGCTTACAAGTTATACGCAGATCGAGA 343
Query 359 AATGTTCCCCAAGTGGATGCCATTTTTGTCATCTGTTGAGGCAAAGGAGGGTAGTCCAGA 418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 344 AATGTTCCCCAAGTGGATGCCATTTTTGTCATCTGTTGAGGCAATGGAGGGTAGTCCAGA 403
Query 419 CCTATCGCGTTATTTGGTAAAACTCGAGTCTTTTGGACAAAATATTGAATATCATTTTCT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 404 CCTATCGCGTTATTTGGTAAAACTCGAGTCTTTTGGACAAAATATTGAATATCACTTTCT 463
Query 479 CGCAAAAAATTTACAGCCAATTCCAGATCGAAAGATACATTGGAGATCTATCGAAGGCTT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CGCAAAAAATTTACAGCCAATTCCAGATCGAAAGATACATTGGAGATCTATCGAAGGCTT 523
Query 539 TGAAAATAGAGGCAGTGTTCGATTTTTCCCAAGAGGACCTTCCTCGTGCTTAGTAGAGAT 598
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 524 TGAAAATAGAGGCAGTGTTCGATTTTTCCCAAGAGGCCCTTCCTCGTGTTTAGTAGAGAT 583
Query 599 TAGTTTTTCATATGAAGTTCCAAATGCTTTTGCTCCAGTTGCATTTGCAATGAAACCGTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TAGTTTTTCATATGAAGTTCCAAATGCTTTTGCTCCAGTTGCATTTGCAATGAAACCGTT 643
Query 659 TATGGAGAAGCTTATTCGTGGAGGATTGCAACGTTTTGCTTCTTTCGTGAAAACCATTTA 718
|||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct 644 TATGGAGAAGATTATTCGTGGAGGATTGGAACGTTTTGCTGCTTTCGTGAAGACCATTTA 703
Query 719 AGGCAAAAATCAAGAATCATTACCAGAAAACTTACttt 756
| |||||| |||||||||||||||||||||||||||||
Sbjct 704 ACGCAAAAGTCAAGAATCATTACCAGAAAACTTACTTT 741
Score = 124 bits (67), Expect = 1e-27
Identities = 79/85 (93%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 756 tttttATGTAATTTATTTTTGGATATGAAATGTTGTTCATACTAATTTACTGAAAAGTAA 815
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 769 TTTTTATGTAATTTATTTTTGAATATGTAATGTTGTTCATACTAATTTACTGAAAAGTAA 828
Query 816 ATAGTTTAAGGTCAATTTTTTCTAG 840
||| | ||| |||||| ||||||||
Sbjct 829 ATAATCTAAAGTCAATCTTTTCTAG 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5