BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470210
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02500.1 | Symbols: SAM1, SAM-1, MAT1, AtSAM1 | S-adenosylme... 1999 0.0
AT4G01850.1 | Symbols: SAM-2, MAT2, SAM2, AtSAM2 | S-adenosylme... 1101 0.0
> AT1G02500.1 | Symbols: SAM1, SAM-1, MAT1, AtSAM1 | S-adenosylmethionine
synthetase 1 | chr1:518251-520437 FORWARD LENGTH=1530
Length=1530
Score = 1999 bits (1082), Expect = 0.0
Identities = 1158/1195 (97%), Gaps = 4/1195 (0%)
Strand=Plus/Plus
Query 265 GATTGTCCGTGACACCTGTCGCGCCATTGGATTTGTCTCTGATGATGTTGGTCTTGATGC 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 GATTGTCCGTGACACCTGTCGCGCCATTGGATTTGTCTCTGATGATGTTGGTCTTGATGC 389
Query 325 TGACAAGTGCAAAGTCCTAGTCAACATTGAGCAACAGAGCCCAGACATTGCCCAAGGAGT 384
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 390 TGACAAATGCAAAGTCCTAGTCAACATTGAGCAACAGAGCCCAGACATTGCTCAAGGAGT 449
Query 385 TCACGGTCACTTCACCAAATGTCCTGAAGACATTGGAGCCGGTGACCAAGGCCACATGTT 444
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 450 TCACGGTCACTTCACCAAATGTCCTGAAGAAATTGGAGCCGGTGACCAAGGGCACATGTT 509
Query 445 TGGTTACGCTACCGATGAAACCCCTGAGTTAATGCCCCTGAGCCATGTTCTTGCCACCAA 504
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TGGTTATGCCACTGATGAAACCCCTGAGTTAATGCCCCTGAGCCATGTTCTTGCCACCAA 569
Query 505 GCTCGGTGCTCGCCTAACAGAAGTCAGAAAGAATGGTACTTGCGCTTGGCTAAGACCTGA 564
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 570 GCTCGGTGCTCGCCTAACAGAAGTCAGAAAGAATGGTACTTGCGCCTGGCTAAGACCTGA 629
Query 565 CGGCAAAACCCAAGTCACTGTTGAGTACTACAACGATAAGGGTGCCATGGTCCCAATCCG 624
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 630 CGGCAAAACCCAAGTCACTGTTGAGTACTACAATGACAAGGGTGCCATGGTCCCAATCCG 689
Query 625 TGTCCACACAGTCCTCATCTCCACCCAACACGATGAAACTGTGACCAACGACGAAATCGC 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 690 TGTCCACACAGTCCTCATCTCCACCCAACACGATGAAACTGTGACCAACGACGAAATTGC 749
Query 685 CCGTGACCTTAAGGAGCATGTCATCAAGCCGGTCATCCCAGAGAAGTACCTAGACGAGAA 744
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 750 CCGTGACCTTAAGGAGCATGTCATCAAGCCAGTCATCCCAGAGAAGTACCTAGACGAGAA 809
Query 745 AACCATCTTTCACTTGAACCCATCAGGCCGATTCGTCATCGGTGGACCCCATGGAGACGC 804
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 810 AACCATCTTCCACTTGAACCCTTCAGGCCGATTCGTCATCGGTGGACCCCATGGAGACGC 869
Query 805 TGGTCTCACCGGGCGTAAGATCATCATCGACACCTACGGTGGATGGGGAGCTCACGGAGG 864
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 870 TGGTCTCACCGGGCGTAAGATCATCATCGACACTTACGGTGGATGGGGAGCTCACGGAGG 929
Query 865 CGGTGCATTCTCTGGCAAAGACCCAACCAAGGTCGACAGAAGCGGAGCCTACATTGTGAG 924
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CGGTGCATTCTCAGGTAAAGACCCAACCAAGGTCGACAGAAGCGGAGCCTACATTGTGAG 989
Query 925 ACAAGCAGCTAAGAGCGTTGTGGCTAACGGGATGGCTCGTAGGGCTCTTGTTCAGGTCTC 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 ACAAGCAGCTAAGAGCGTTGTGGCTAACGGGATGGCTCGTAGGGCTCTTGTTCAGGTCTC 1049
Query 985 ATACGCCATTGGAGTCCCTGAGCCATTGTCTGTCTTTGTGGACACTTACGAGACTGGTTT 1044
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1050 ATACGCCATTGGAGTCCCTGAGCCATTGTCTGTCTTTGTGGACACTTATGAGACTGGATT 1109
Query 1045 GATTCCAGACAAGGAGATACTAAAGATTGTGAAGGAGAGCTTCGACTTCAGACCAGGAAT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GATTCCAGACAAGGAGATACTAAAGATTGTGAAGGAGAGCTTCGACTTCAGACCAGGAAT 1169
Query 1105 GATGACAATTAACCTTGACCTAAAGAGAGGAGGAAACGGAAGGTTCTTGAAAACTGCGGC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 GATGACAATTAACCTTGACCTAAAGAGAGGAGGAAACGGAAGGTTCTTGAAAACTGCGGC 1229
Query 1165 GTACGGACACTTCGGAAGAGACGACCCTGACTTCACCTGGGAAGTCGTCAAGCCACTCAA 1224
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TTACGGACACTTTGGAAGAGACGACCCTGACTTCACCTGGGAAGTCGTCAAGCCACTCAA 1289
Query 1225 GTGGGACAAACCTCAAGCTTAAATTTTACCTACTCTGTTTCTATCTTCCTTCCGCAAACC 1284
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 1290 GTGGGACAAACCTCAAGCTTAAATTTTACCTACTCTGTTTCTGTCTTCATTCCACAAACC 1349
Query 1285 AATTATCTGCTCACGtttttatttctctgtttttgttttttAATGTGGTTATGTATCATT 1344
|||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct 1350 AATTATCTGCTCACTTTTTTATTTCTCTGTTTTTGTGGTTTATTGTGTTTATGTATCATT 1409
Query 1345 GTACTTGAGTTATTTCAATTGGGTGTTTGtttttttATGGCGACTTTTACACGGGTTGCA 1404
||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1410 GTACTTGAGCTATTTCAATTGGGTGTTTGTTTTT--ATGGCGACTTTTACACGGCTTGGA 1467
Query 1405 GTAAGTTTCATGTTGTTCTTATATAATTAT--CCATGAAAAAATAATATAAACTA 1457
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1468 GTAAGTTTCATGTTGTTCTTATATAATTATAACCATGAAAAATTAATATAAACTA 1522
Score = 359 bits (194), Expect = 5e-98
Identities = 212/221 (96%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 45 AGAGATCTGAGTTTCTCTTCTTCGAGATCTGATCGCCGAATCTCATAATCTATCTTCGAA 104
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 65 AGAGATCTGAGTTTCTCTTCTTCGAGATCTGATCGCCGAATCTCATAATCTCCCATCGAA 124
Query 105 GCAAAATGGAGACTTTCCTATTCACATCCGAGTCTGTGAACGAGGGACACCCAGACAAGC 164
||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 125 GCAGAATGGAGACTTTTCTATTCACATCTGAGTCTGTAAACGAGGGACACCCAGACAAGC 184
Query 165 TCTGTGACCAGATCTCTGATGCAGTCCTCGATGCCTGTCTTGAACAAGACCCTGACAGCA 224
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 185 TCTGTGACCAGATCTCTGATGCAGTCCTCGATGCCTGCCTTGAACAAGACCCTGACAGCA 244
Query 225 AAGTTGCTTGTGAGACTTGCACCAAGACCAACATGGTCATG 265
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 245 AAGTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATG 285
Score = 76.8 bits (41), Expect = 5e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 CTCGTCCCAAACCGTTCCTTCTCTTTTAACACTTGTTCTTTTAA 44
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCGTCTCAAACCGTTCCTTCTCTTTTAACACTTGTTCTTTTAA 44
> AT4G01850.1 | Symbols: SAM-2, MAT2, SAM2, AtSAM2 | S-adenosylmethionine
synthetase 2 | chr4:796097-798286 REVERSE LENGTH=1480
Length=1480
Score = 1101 bits (596), Expect = 0.0
Identities = 860/989 (87%), Gaps = 12/989 (1%)
Strand=Plus/Plus
Query 265 GATTGTCCGTGACACCTGTCGCGCCATTGGATTTGTCTCTGATGATGTTGGTCTTGATGC 324
||||||||||||||| || || |||||||||| ||||||| |||||||||||||||||
Sbjct 298 GATTGTCCGTGACACTTGCCGTTCCATTGGATTCATCTCTGACGATGTTGGTCTTGATGC 357
Query 325 TGACAAGTGCAAAGTCCTAGTCAACATTGAGCAACAGAGCCCAGACATTGCCCAAGGAGT 384
|||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||| ||
Sbjct 358 TGACAAATGCAAAGTCCTTGTTAACATTGAACAACAGAGCCCAGACATTGCTCAAGGTGT 417
Query 385 TCACGGTCACTTCACCAAATGTCCTGAAGACATTGGAGCCGGTGACCAAGGCCACATGTT 444
||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||
Sbjct 418 TCACGGTCACTTCACCAAACGTCCAGAAGACATTGGAGCTGGTGACCAAGGACACATGTT 477
Query 445 TGGTTACGCTACCGATGAAACCCCTGAGTTAATGCCCCTGAGCCATGTTCTTGCCACCAA 504
|||||| || || ||||||||||||||| | ||||| |||| ||||| ||||| |||||
Sbjct 478 TGGTTATGCCACTGATGAAACCCCTGAGCTCATGCCTTTGAGTCATGTCCTTGCAACCAA 537
Query 505 GCTCGGTGCTCGCCTAACAGAAGTCAGAAAGAATGGTACTTG-CGCTTGGCTAAGACCTG 563
| | |||||||| || || |||||||| |||||||| ||||| || |||| ||||||| |
Sbjct 538 GATTGGTGCTCGTCTCACTGAAGTCAGGAAGAATGGAACTTGCCG-TTGGTTAAGACCAG 596
Query 564 ACGGCAAAACCCAAGTCACTGTTGAGTACTACAACGATAAGGGTGCCATGGTCCCAATCC 623
| ||||| |||||||||||||||||||||||||| || || || || ||||| ||| |||
Sbjct 597 ATGGCAAGACCCAAGTCACTGTTGAGTACTACAATGACAATGGCGCTATGGTTCCAGTCC 656
Query 624 GTGTCCACACAGTCCTCATCTCCACCCAACACGATGAAACTGTGACCAACGACGAAATCG 683
|||||||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||| || |
Sbjct 657 GTGTCCACACCGTCCTGATCTCAACCCAGCACGATGAAACCGTTACCAATGACGAGATTG 716
Query 684 CCCGTGACCTTAAGGAGCATGTCATCAAGCCGGTCATCCCAGAGAAGTACCTAGACGAGA 743
| |||||||| ||||||||||| ||||| || ||||||||||||| ||||| ||||| |
Sbjct 717 CGCGTGACCTCAAGGAGCATGTGATCAAACCAATCATCCCAGAGAAATACCTTGACGACA 776
Query 744 AAACCATCTTTCACTTGAACCCATCAGGCCGATTCGTCATCGGTGGACCCCATGGAGACG 803
|||||||||| ||| | |||||||||||||| || || ||||| ||||| || || || |
Sbjct 777 AAACCATCTTCCACCTCAACCCATCAGGCCGGTTTGTGATCGGGGGACCACACGGTGATG 836
Query 804 CTGGTCTCACCGGGCGTAAGATCATCATCGACACCTACGGTGGATGGGGAGCTCACGGAG 863
||||| | || || |||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 837 CTGGTTTAACTGGACGTAAGATCATCATTGACACATACGGAGGATGGGGAGCTCATGGAG 896
Query 864 GCGGTGCATTCTCTGGCAAAGACCCAACCAAGGTCGACAGAAGCGGAGCCTACATTGTGA 923
| ||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct 897 GTGGTGCTTTCTCAGGCAAAGACCCAACCAAAGTCGACAGAAGTGGAGCTTACATCGTGA 956
Query 924 GACAAGCAGCTAAGAGCGTTGTGGCTAACGGGATGGCTCGTAGGGCTCTTGTTCAGGTCT 983
| |||||||| ||||| || |||||||| || |||||||| ||||||||||| |||||||
Sbjct 957 GGCAAGCAGCAAAGAGTGTGGTGGCTAATGGCATGGCTCGCAGGGCTCTTGTCCAGGTCT 1016
Query 984 CATACGCCATTGGAGT-CCCTGAGCCATTGTCTGTCTTTGTGGACACTTAC-GAGACTGG 1041
|||||||||||||||| ||| ||||||||||||||||| || ||||||||| || || ||
Sbjct 1017 CATACGCCATTGGAGTACCC-GAGCCATTGTCTGTCTTCGTTGACACTTACGGA-ACAGG 1074
Query 1042 TTTGATTCCAGACAAGGAGATACTAAAGATTGTGAAGGAGAGC-TTCGACTTCAGACCAG 1100
|||||||||||||||||||| || ||||| ||||| |||| | ||||| ||||||||||
Sbjct 1075 GTTGATTCCAGACAAGGAGATCCTGAAGATCGTGAAAGAGA-CATTCGATTTCAGACCAG 1133
Query 1101 GAATGATGACAATTAACCTT-GACCTAAAGAGAGGAGGAAACGGAAGG-TTCTTGAAAAC 1158
||||||||||||| || ||| ||| | |||||||||||||| |||||| ||| ||||||
Sbjct 1134 GAATGATGACAATCAA-CTTGGACTTGAAGAGAGGAGGAAATGGAAGGTTTC-AGAAAAC 1191
Query 1159 TGCGGCGTACGGACACTTCGGAAGAGACGACCCTGACTTCACCTGGGAAGTCGTCAAGCC 1218
|| ||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1192 GGCAGCGTATGGACATTTCGGAAGAGACGACCCTGACTTCACCTGGGAGGTCGTGAAGCC 1251
Query 1219 ACTCAAGTGGGACAAACCTCAAGCTTAAA 1247
|||||||||||||||||||||||||||||
Sbjct 1252 ACTCAAGTGGGACAAACCTCAAGCTTAAA 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5