BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470212
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02510.1 | Symbols: KCO4, ATKCO4, ATTPK4, TPK4 | Outward rec... 1611 0.0
> AT1G02510.1 | Symbols: KCO4, ATKCO4, ATTPK4, TPK4 | Outward rectifying
potassium channel protein | chr1:520498-521668 REVERSE
LENGTH=1086
Length=1086
Score = 1611 bits (872), Expect = 0.0
Identities = 1017/1085 (94%), Gaps = 18/1085 (2%)
Strand=Plus/Plus
Query 1 aagaagaataagaag-aagaagaGCGTTTTATAAATGGAAGAAGAGACCCTTCTCAATGA 59
|||||||| ||| || |||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 10 AAGAAGAAGAAG-AGAAAGAAGAGCGTTTTCTAAATGGAAGAAGAGAACCTTCTCAATGA 68
Query 60 GAACCTTCTCCGTCCCCACGAGTCCTCACCGGGAGAAACTCAAGTCACCGCCGTCACCAC 119
||||||||||| |||| ||||||||||||||| |||||||| | | ||||||||
Sbjct 69 GAACCTTCTCCATCCCAACGAGTCCTCACCGGAAGAAACTC-A---A-----GTCACCAC 119
Query 120 CGTATCAAAATCGAAATGGACCATTCTTGTACTAGCGATGATCCTCCTCTTGATCTACTT 179
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 120 CGTATCAAAATCGAAATGGACCATTCTTGTACTAGCCATGATCCTCCTCTTGGTCTACTT 179
Query 180 AACCTTCGGGGTTTTCACTTACTCATTCTTTCGAGACCAGTTCTCCGGAACCGAGACCAA 239
|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AACCTTCGGGGTTTGCACATACTCATTCTTTCGAGACCAATTCTCCGGAACCGAGACCAA 239
Query 240 TCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTGTACAGTCGGTTACGGCGA 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 240 TCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTCTACAGTCGGTTACGGGGA 299
Query 300 CATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATTGTCTTGGTATCAACCGGCGT 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATCGTCTTGGTATCAACCGGCGT 359
Query 360 CGTATTTCTCGATTATCTACTCAACAGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAA 419
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 CGTATTTCTTGATTATCTACTCAACCGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAA 419
Query 420 CGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGA 479
Query 480 AGATGGGAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTG 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGATGGCAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTG 539
Query 540 CGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGCGACTGGATTGGTTAGATTCGGT 599
||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct 540 CGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGAGATTGGATTGGTTGGATTCGGT 599
Query 600 TTACTTGTCGATTATTTCGGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACACT 659
|||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 600 TTACTTGTCGGTTATCTCCGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACGGT 659
Query 660 TGAAGGGAGAGGTTTCGCAGTGTTATGGCTTCTTCTTTCAACTATTGCAATGGCTACTTT 719
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 660 TGAAGGGAGAGGCTTCGCAGTGTTTTGGCTTCTTCTTTCAACTATTGCAATGGCTACTCT 719
Query 720 GTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCACGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 GTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCCCGAG 779
Query 780 TGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAATGTGGAAAGATAAGTGAGGATGATAT 839
|||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||
Sbjct 780 TGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAAAGTGGGAGGATTAGTGAGGATGATAT 839
Query 840 AAAGCAGATCGTAAGAGAGTTTGAGAATCTTGAAAAAGTACCATCAAGCGGGTCGTGACA 899
||||||||||||||||||||| |||||||||||| |||| ||||||||||| || |||||
Sbjct 840 AAAGCAGATCGTAAGAGAGTTCGAGAATCTTGAAGAAGTGCCATCAAGCGGATCATGACA 899
Query 900 ATTTGCCAAAGATCACATTGCCCTAACTCTAGCCTGGTAATTAGATATGAAATTGCAGAG 959
|||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||
Sbjct 900 ATTTGCCAAAGATCACATTGCCCTAACTCTTGTCTGGTACT-AGATATGAAATTGCAGAG 958
Query 960 CTGTACATGGTTAGCTTTTCTTTTTGAATTTTAGTAGAAAAATGTATAGAAGAATCATGA 1019
|| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 959 ATGCACATGGTTAGTTTTTCTTTTTGAATTTTAGTATAAAA-TGTATAGAAGAATCACAA 1017
Query 1020 CAATGATGATGA---TGCTACTCTGTTTTGACCTCTTGCGACTTGAAAAGGAAGAAAATA 1076
||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1018 AAATGATGATGACGATGCTACTCTGTTTTGACCT-TGG-GACTTGAAAAGGAAGAAAATA 1075
Query 1077 CACTG 1081
| |||
Sbjct 1076 CTCTG 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5