BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470212 Length=1081 Score E Sequences producing significant alignments: (Bits) Value AT1G02510.1 | Symbols: KCO4, ATKCO4, ATTPK4, TPK4 | Outward rec... 1611 0.0 > AT1G02510.1 | Symbols: KCO4, ATKCO4, ATTPK4, TPK4 | Outward rectifying potassium channel protein | chr1:520498-521668 REVERSE LENGTH=1086 Length=1086 Score = 1611 bits (872), Expect = 0.0 Identities = 1017/1085 (94%), Gaps = 18/1085 (2%) Strand=Plus/Plus Query 1 aagaagaataagaag-aagaagaGCGTTTTATAAATGGAAGAAGAGACCCTTCTCAATGA 59 |||||||| ||| || |||||||||||||| |||||||||||||||| |||||||||||| Sbjct 10 AAGAAGAAGAAG-AGAAAGAAGAGCGTTTTCTAAATGGAAGAAGAGAACCTTCTCAATGA 68 Query 60 GAACCTTCTCCGTCCCCACGAGTCCTCACCGGGAGAAACTCAAGTCACCGCCGTCACCAC 119 ||||||||||| |||| ||||||||||||||| |||||||| | | |||||||| Sbjct 69 GAACCTTCTCCATCCCAACGAGTCCTCACCGGAAGAAACTC-A---A-----GTCACCAC 119 Query 120 CGTATCAAAATCGAAATGGACCATTCTTGTACTAGCGATGATCCTCCTCTTGATCTACTT 179 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 120 CGTATCAAAATCGAAATGGACCATTCTTGTACTAGCCATGATCCTCCTCTTGGTCTACTT 179 Query 180 AACCTTCGGGGTTTTCACTTACTCATTCTTTCGAGACCAGTTCTCCGGAACCGAGACCAA 239 |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 180 AACCTTCGGGGTTTGCACATACTCATTCTTTCGAGACCAATTCTCCGGAACCGAGACCAA 239 Query 240 TCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTGTACAGTCGGTTACGGCGA 299 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 240 TCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTCTACAGTCGGTTACGGGGA 299 Query 300 CATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATTGTCTTGGTATCAACCGGCGT 359 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 CATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATCGTCTTGGTATCAACCGGCGT 359 Query 360 CGTATTTCTCGATTATCTACTCAACAGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAA 419 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 360 CGTATTTCTTGATTATCTACTCAACCGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAA 419 Query 420 CGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGA 479 Query 480 AGATGGGAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTG 539 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AGATGGCAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTG 539 Query 540 CGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGCGACTGGATTGGTTAGATTCGGT 599 ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| Sbjct 540 CGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGAGATTGGATTGGTTGGATTCGGT 599 Query 600 TTACTTGTCGATTATTTCGGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACACT 659 |||||||||| |||| || |||||||||||||||||||||||||||||||||||||| | Sbjct 600 TTACTTGTCGGTTATCTCCGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACGGT 659 Query 660 TGAAGGGAGAGGTTTCGCAGTGTTATGGCTTCTTCTTTCAACTATTGCAATGGCTACTTT 719 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 660 TGAAGGGAGAGGCTTCGCAGTGTTTTGGCTTCTTCTTTCAACTATTGCAATGGCTACTCT 719 Query 720 GTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCACGAG 779 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 720 GTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCCCGAG 779 Query 780 TGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAATGTGGAAAGATAAGTGAGGATGATAT 839 |||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||| Sbjct 780 TGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAAAGTGGGAGGATTAGTGAGGATGATAT 839 Query 840 AAAGCAGATCGTAAGAGAGTTTGAGAATCTTGAAAAAGTACCATCAAGCGGGTCGTGACA 899 ||||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||||| Sbjct 840 AAAGCAGATCGTAAGAGAGTTCGAGAATCTTGAAGAAGTGCCATCAAGCGGATCATGACA 899 Query 900 ATTTGCCAAAGATCACATTGCCCTAACTCTAGCCTGGTAATTAGATATGAAATTGCAGAG 959 |||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||| Sbjct 900 ATTTGCCAAAGATCACATTGCCCTAACTCTTGTCTGGTACT-AGATATGAAATTGCAGAG 958 Query 960 CTGTACATGGTTAGCTTTTCTTTTTGAATTTTAGTAGAAAAATGTATAGAAGAATCATGA 1019 || |||||||||| ||||||||||||||||||||| |||| ||||||||||||||| | Sbjct 959 ATGCACATGGTTAGTTTTTCTTTTTGAATTTTAGTATAAAA-TGTATAGAAGAATCACAA 1017 Query 1020 CAATGATGATGA---TGCTACTCTGTTTTGACCTCTTGCGACTTGAAAAGGAAGAAAATA 1076 ||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 1018 AAATGATGATGACGATGCTACTCTGTTTTGACCT-TGG-GACTTGAAAAGGAAGAAAATA 1075 Query 1077 CACTG 1081 | ||| Sbjct 1076 CTCTG 1080 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52961574975 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5