BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470218
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02580.1 | Symbols: MEA, EMB173, FIS1, SDG5 | SET domain-con... 2793 0.0
> AT1G02580.1 | Symbols: MEA, EMB173, FIS1, SDG5 | SET domain-containing
protein | chr1:544783-549202 FORWARD LENGTH=2291
Length=2291
Score = 2793 bits (1512), Expect = 0.0
Identities = 1793/1930 (93%), Gaps = 13/1930 (1%)
Strand=Plus/Plus
Query 306 TTT-TTAATAAAGAGGCACCATTATTTCCAAGTGTCAACCTTCCAGTTGTTGAGCAGCTA 364
||| || || |||| | ||||||||| ||||||||||| |||||| |||||||| |||||
Sbjct 353 TTTCTTGATGAAGATGTACCATTATTACCAAGTGTCAAGCTTCCAATTGTTGAGAAGCTA 412
Query 365 CCACGATCCCTTACATGGGTCTTCATCAAAAG--G-CATCTGATGGCTGAAAGTGATTCT 421
||||||||| ||||||||||||||| |||||| | || |||||||||||||||||||||
Sbjct 413 CCACGATCCATTACATGGGTCTTCACCAAAAGTAGCCAGCTGATGGCTGAAAGTGATTCT 472
Query 422 GTGATTGGTAAGAGACAAATCTATTATTTGAATGGTGAGGCACTAGAATTGAGCAGCgaa 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 473 GTGATTGGTAAGAGACAAATCTATTATTTGAATGGTGAGGCACTAGAATTGAGCAGTGAA 532
Query 482 gaagaagaagaagatgaagaagaagatgaggaagaagccaagaaagaaAAATGCGAATTT 541
||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 533 GAAGATGAGGAAGATGAAGAAGAAGATGAGGAAGAAATCAAGAAAGAAAAATGCGAATTT 592
Query 542 TCCAAAGATGTAGACCGGTTTATATGGACGGTTGGGCAGGATTATGGTTTGGATGATCTG 601
|| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 593 TCTGAAGATGTAGACCGATTTATATGGACGGTTGGGCAGGACTATGGTTTGGATGATCTG 652
Query 602 GTCGTGCAGCGAGCTCTCGCCAAGTTCCTCGAAGTGGAAGTTTCCGATATATTGGAAAGA 661
||||||| ||| ||||||||||||| |||||||||||| ||||| || ||||||||||||
Sbjct 653 GTCGTGCGGCGTGCTCTCGCCAAGTACCTCGAAGTGGATGTTTCGGACATATTGGAAAGA 712
Query 662 TACAATGAGCTCAAGCTTAAGAATGATGAAACTGTTGGTGAGGCTTCTGATTTGACATCC 721
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 713 TACAATGAACTCAAGCTTAAGAATGATGGAACTGCTGGTGAGGCTTCTGATTTGACATCC 772
Query 722 AAGACAATAACTACTGCTTTTCAGGATTTTGCTGATAGACGTCATTGCCGCCGTTGCTTG 781
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 773 AAGACAATAACTACTGCTTTCCAGGATTTTGCTGATAGACGTCATTGCCGTCGTTGCATG 832
Query 782 ATATTTGATTGTCATATGCATGAGAAGTTTGAGCCCGAGTTTAGACCCAGCGAAGACAAA 841
||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 833 ATATTCGATTGTCATATGCATGAGAAGTATGAGCCCGAGTCTAGATCCAGCGAAGACAAA 892
Query 842 TCTGGTTTGTTTGAGAATGAAGATAGAGAACCATGCAGTGAGCATTGTTACCTCAAGGTG 901
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 893 TCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCAGTGAGCATTGTTACCTCAAGGTG 952
Query 902 AGGAGTGTGACAGAAGCTGATCATGCGGTAGATAATGATAACTCTATATCAAACAAGAAT 961
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
Sbjct 953 AGGAGTGTGACAGAAGCTGATCATGTGATGGATAATGATAACTCTATATCAAACAAGATT 1012
Query 962 GTGGTCTCAGATCCAAAC-ACAACTATGTGGACGCCTGTGGAGAAGGATCTTTACTTGAA 1020
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1013 GTGGTCTCAGATCCAAACAAC-ACTATGTGGACGCCTGTAGAGAAGGATCTTTACTTGAA 1071
Query 1021 AGGAGTTCAAATCTTTGGGAGAAACAGTTGTGCTATTACATTAAACATACATCGGGGGCT 1080
|||| || | || ||||||||||||||||||| | || |||||||||||| |||||||||
Sbjct 1072 AGGAATTGAGATATTTGGGAGAAACAGTTGTGATGTTGCATTAAACATACTTCGGGGGCT 1131
Query 1081 TAAGACGTGTCTAGAGGTTTACAATTACATGCTTGAACAAGATCAATGTACTATGTCATT 1140
||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1132 TAAGACGTGCCTAGAGATTTACAATTACATGCGCGAACAAGATCAATGTACTATGTCATT 1191
Query 1141 AGTCCTTCACAAAACTACAAAAACAAAGAATCAGGTTAACAAAAAAGTATCTCGAAAAGG 1200
|| |||| ||||||||||| ||| | | |||||||||| ||||||||||||||||||| |
Sbjct 1192 AGACCTTAACAAAACTACACAAAGACACAATCAGGTTACCAAAAAAGTATCTCGAAAAAG 1251
Query 1201 TACTAGGTCGGTCCGCAAAAAATCCAGACTCCGAAAATATGCTCGTTATCCGCCTGCTTT 1260
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1252 TAGTAGGTCGGTCCGCAAAAAATCGAGACTCCGAAAATATGCTCGTTATCCGCCTGCTTT 1311
Query 1261 GAAGAAAACAACTAATGGAGAAGCTAAGTTTTATAAGCACTACTCACCATGCACTTGCAA 1320
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1312 AAAGAAAACAACTAGTGGAGAAGCTAAGTTTTATAAGCACTACACACCATGCACTTGCAA 1371
Query 1321 GTCAAAATGTGGATATCAATGCCCTTGTTTAACTAATGAAAATTGCTGTGAGAAATATTG 1380
||||||||||||| | |||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1372 GTCAAAATGTGGACAGCAATGCCCTTGTTTAACTCACGAAAATTGCTGCGAGAAATATTG 1431
Query 1381 CGGGTGCCCGAAGGATTGCAACAATCGCTTTGGAGGATGTAATTGTGCAATTGGCCAATG 1440
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 CGGGTGCTCAAAGGATTGCAACAATCGCTTTGGAGGATGTAATTGTGCAATTGGCCAATG 1491
Query 1441 CACAAA-CAGACAATGTCCTTGCTTTGCTGCTAATCGTGAATGTGATCCAGATCTATGTC 1499
|||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1492 CACAAATC-GACAATGTCCTTGTTTTGCTGCTAATCGTGAATGCGATCCAGATCTTTGTC 1550
Query 1500 GGAGTTGTCCTCTTAGCTGTGGAGATGGCTCTCTTGGTGAGCCATCAGAGCAAATACAAT 1559
||||||||||||||||||||||||||||| ||||||||||| || ||| |||||| ||||
Sbjct 1551 GGAGTTGTCCTCTTAGCTGTGGAGATGGCACTCTTGGTGAGACACCAGTGCAAATCCAAT 1610
Query 1560 GCAAGAACATGCATTTCCTCCTTaaaaaaaaTAAGAAGATTCTCATTGGAAAGTCTAATG 1619
||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||| |||
Sbjct 1611 GCAAGAACATGCAATTCCTCCTTCAAACCAATAAAAAGATTCTCATTGGAAAGTCTGATG 1670
Query 1620 TTCATGGATGGGGTGCATTTACACCGGACTCTCTTAAAAAGAATGAGTTTCTAGGAGAAT 1679
||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 1671 TTCATGGATGGGGTGCATTTACATGGGACTCTCTTAAAAAGAATGAGTATCTCGGAGAAT 1730
Query 1680 ATACTGGAGAACTGATCACTCATGAGGAAGCAAATGAGCGTGGGAGAGTAGAAGATCGGA 1739
||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct 1731 ATACTGGAGAACTGATCACTCATGATGAAGCTAATGAGCGTGGGAGAATAGAAGATCGGA 1790
Query 1740 TTGGTTCTTCATACCTCTTTACCTTGAATGATCAGCTCGAAATCGATGCTCGCCGTTATG 1799
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1791 TTGGTTCTTCCTACCTCTTTACCTTGAATGATCAGCTCGAAATCGATGCTCGCCGTAAAG 1850
Query 1800 GAAACAAGTTCAAATTTCTCAATCACTCAGCAAGACCTAACTGCTACGCCAAGTTGATGA 1859
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GAAACGAGTTCAAATTTCTCAATCACTCAGCAAGACCTAACTGCTACGCCAAGTTGATGA 1910
Query 1860 TTGTGAGAGGAGATCAGAGGATTGGTCTATTTGCAGAGAGAGCAATCGAACAAAATGAGG 1919
|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 1911 TTGTGAGAGGAGATCAGAGGATTGGTCTATTTGCGGAGAGAGCAATCGAAGAAGGTGAGG 1970
Query 1920 AGCTTTTCTTCGACTACTGCTATGGACCAGAGCATGCGGATTGGTCTCGTGGTCGAGAAC 1979
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1971 AGCTTTTCTTCGACTACTGCTATGGACCAGAACATGCGGATTGGTCGCGTGGTCGAGAAC 2030
Query 1980 CTAGAAAGACTGGTGCTTCTAAAAGGTCTAAGGAAGCCCGTCCATCTAGATAGATTTGGA 2039
|||||||||||||||||||||||||||||||||||||||||||| || | ||| ||| ||
Sbjct 2031 CTAGAAAGACTGGTGCTTCTAAAAGGTCTAAGGAAGCCCGTCCAGCTCGTTAGTTTTTGA 2090
Query 2040 TCTGAGGAGAAGCAGCAATACAAGCAGTCGTTTTTTAAAGTTATGGTAATATCAATAAAT 2099
||||||||||||||||||| ||||||||| |||||| | ||||||||| ||||||| |||
Sbjct 2091 TCTGAGGAGAAGCAGCAATTCAAGCAGTCCTTTTTTTATGTTATGGTA-TATCAATTAAT 2149
Query 2100 AATGTAATGCTATTTTGTGTTACTAAACCAAAACTTAAgtttctgtttaatttgtttcag 2159
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2150 AATGTAATGCTATTTTGTGTTACTAAACCAAAACTTAAGTTTCTGTTTTATTTGTTTTAG 2209
Query 2160 ggttttttgttttgtttgtcatatgtgtcttaagctctcaaagttttatttttgtatttC 2219
||| |||||||| || | |||||||||||||| || |||||||||| ||||||||||||
Sbjct 2210 GGTGTTTTGTTT-GTAT--CATATGTGTCTTAA-CTTTCAAAGTTTTCTTTTTGTATTTC 2265
Query 2220 AATTAAAAAA 2229
|||| |||||
Sbjct 2266 AATTTAAAAA 2275
Score = 440 bits (238), Expect = 3e-122
Identities = 288/311 (93%), Gaps = 8/311 (3%)
Strand=Plus/Plus
Query 1 AGGCGAGTGGTTAATGGAGAAGGACAACCATGAGGACGATGGTGAGGATTTGCCACCCGA 60
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1 AGGCGAGTGGTTAATGGAGAAGGAAAACCATGAGGACGATGGTGAGGGTTTGCCACCCGA 60
Query 61 TA-TAAATCAGATAAAAGAGCAAATCGAAGAGGAGAGATTTCTGCATATCAAGA-AAACA 118
| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 61 -ACTAAATCAGATAAAAGAGCAAATCGAAAAGGAGAGATTTCTGCATATCAAGAGAAA-A 118
Query 119 TTCGAGCTGAGATGCATTCCAAGTGTAGCTGCTCATGCTTCACACCATCAATCGTTTGAC 178
||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 119 TTCGAGCTGAGATACATTCCAAGTGTGGCTACTCATGCTTCACACCATCAATCGTTTGAC 178
Query 179 TTAAACCAGCCC-CTTGCAGAGGATGATAATGAAGGAGACAACAAAACACTTCTT-TCTA 236
|||||||||||| || |||||||||||||||| ||||||||||||| ||||| || || |
Sbjct 179 TTAAACCAGCCCGCT-GCAGAGGATGATAATGGAGGAGACAACAAATCACTT-TTGTCGA 236
Query 237 GAATGCAAAACCCACTTCATCATTTCAGTGCCTTATCTGATTCTGATACTTACGAAGATC 296
|||||||||||||||||| |||||||||||||| |||||||| | || ||||||||||||
Sbjct 237 GAATGCAAAACCCACTTCGTCATTTCAGTGCCTCATCTGATTATAATTCTTACGAAGATC 296
Query 297 AAGGTTGTGTT 307
|||||| ||||
Sbjct 297 AAGGTTATGTT 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110591800635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5