BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470221
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02630.1 | Symbols: | Nucleoside transporter family protein... 1941 0.0
> AT1G02630.1 | Symbols: | Nucleoside transporter family protein
| chr1:560610-562424 REVERSE LENGTH=1609
Length=1609
Score = 1941 bits (1051), Expect = 0.0
Identities = 1159/1211 (96%), Gaps = 7/1211 (1%)
Strand=Plus/Plus
Query 2 CAAAGTAGTGAGATCAAGAGAGAGaaaaaaaGGAGCTACAATGGTTGATGAGAAAGTAAG 61
||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |
Sbjct 4 CAAAGTAGTGAGATCAAGAGAGA-AAAAAGGGGAGTTACAATGGTTGATGAGAAAGTGAT 62
Query 62 TGTTGATGAAGTTGAGACAAGAGACGCTTATAGAGTTGCGTACGTGATCCATTTCTTGTT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGTTGATGAAGTTGAGACAAGAGACGCTTATAGAGTTGCGTACGTGATCCATTTCTTGTT 122
Query 122 GGGGGCTGGTAGTTTAATACCATGGAACGCTTTGATCACAGCCGTTGATTACTTTGGCTA 181
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 123 GGGTGCTGGTAGTTTAATACCATGGAACGCTTTGATCACTGCCGTTGATTACTTTGGCTA 182
Query 182 CTTGTACCCGGACAAGCATGTAGAGAAGACTTTCACCGTGGCTTACATGAGCTGCTCGGT 241
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 183 CTTGTACCCGGACAAGCATGTAGAGAAGACTTTCACTGTGGCTTACATGAGCTGTTCGGT 242
Query 242 CCTTGTTTTGGTTTTGATGATGACTTGGAACACAAGGCTGAGCTATAGAGTGAGGATGAA 301
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 243 TCTTGTTTTGGTTTTGATGATGACTTGGAACACAAGGATGAGCTACAGAGTGAGGATGAA 302
Query 302 CTTGGGGTTTTCCATGTTCATCATTGCCATGATGATTTCT-CCTTTCATAGATTGGGTTT 360
|||||||||||||||||||||||| ||||||||||||||| || || ||||||||||| |
Sbjct 303 CTTGGGGTTTTCCATGTTCATCATCGCCATGATGATTTCTCCCCTT-ATAGATTGGGTCT 361
Query 361 GGAAAGGTGAAAAGGGTGAGAATGTTTCTTACAAATTGATGGTTGGATCAGTCGTGA-TC 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 362 GGAAAGGTGAAAAGGGTGAGAATGTTTCTTACATGTTGATGGTTGGATCAGTCGT-ACTC 420
Query 420 TGTGGTTTAGCTGATGGATTGGTCGGAGGAAGTTTGATTGGTTCAGCTGGAAAGCTTCCT 479
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 421 TGTGGTTTAGCTGATGGAGTGGTTGGAGGAAGTTTGATTGGTTCAGCCGGAAAGCTTCCT 480
Query 480 AGACAGTACATGCAAGCCATTTTTGCCGGCACTGCCTCTTCAGGTATTATTATCTCCCTC 539
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 AGACAGTACATGCAAGCAATTTTTGCCGGCACTGCCTCTTCAGGTATTATCATCTCCCTC 540
Query 540 CTTAGGATTGCAACTAAAGCTTCGCTGCCACAAACACCGCAGGGGATGCGAACCAGTGCT 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTAGGATTGCGACTAAAGCTTCGCTGCCACAAACACCGCAGGGGATGCGAACCAGTGCT 600
Query 600 CATTCCTATTTTATAGTTAGTTCTACCATCCTCGTATGTTGCTTCATTTGTTGTAACGTG 659
||||||||||| ||||| || |||||||||||| ||||||||||||||| ||||||||||
Sbjct 601 CATTCCTATTTCATAGTCAGCTCTACCATCCTCCTATGTTGCTTCATTTCTTGTAACGTG 660
Query 660 CTCCACAAGTTACCAGTAATGCAACAACACCTCAAATTTCATCAACCTTTGCACTCGACT 719
|| |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 661 CTACACAAGCTACCAGTAATGCAACAACACCTCAAGTTTCATCAACCTTTGCATTCGACT 720
Query 720 CTGACAATATGGATGGTTGGGAGGAAGATCAAGTGGCCAGCTTCGGGTATGCTAATAATA 779
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 CTGACAATATGGATGGTTGGGAGGAAAATCAAGTGGCCAGCTTCGGGTATGCTAATAAT- 779
Query 780 C-ACACCGTTACCTTATCGATATTTCCAGGATTTATAGCTGAGAATTTGAAGTCCCAACT 838
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTACTCTGTTACCTTATCGATATTTCCAGGATTTATAGCTGAGAATTTGAAGTCCCAACT 839
Query 839 TCTCCAAAGTTGGTATCCTATTTTGCTCATCACTGTGTACAACATCTCGGATTTCGTAGG 898
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 TCTCCAAAGTTGGTATCCCATTTTGCTCATCACTGTGTACAACATATCGGATTTCGTAGG 899
Query 899 CAAGTCACTCACTGCACTCTATGTATGGCAGAGTATAAAATCGGCTACATGGGCTTGTAT 958
|||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 900 CAAGTCACTCACCGCACTCTATCTATGGCAAAGTATAAAATCGGCTACATGGGCTTGTAT 959
Query 959 CGTGAGGCTTCTGTTTTATCCTCTTTTCTCTGCGTGTCTACGTGGACCGCAATGGTTAAG 1018
||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 960 CGTTAGGCTTCTCTTTTATCCTCTTTTCTCTGCATGTCTACGTGGACCAAAATGGTTAAG 1019
Query 1019 AACAGAAGTGCCAGTGGTTGTCTTGACGTTCATGCTAGGTCTTACCAACGGCTACCTCAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AACAGAAGTGCCAGTGGTTGTCTTGACGTTCATGCTAGGTCTTACCAACGGCTACCTCAC 1079
Query 1079 TAGCGTGCTCATGATCATGGCTCCCAAAACGGTTCATGCATCAGAAGCAGAACTTGCAGC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TAGCGTGCTCATGATCATGGCTCCCAAAACGGTTCATGCATCAGAAGCAGAACTTGCAGC 1139
Query 1139 CATCTTCATGGTTGTTTTTCTAGGACTAGGTCTTGTTTGTGGCTCTGTTATTGGTTGGCT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CATCTTCATGGTTGTTTTTCTAGGACTAGGTCTTGTTTGTGGCTCTGTTATTGGTTGGCT 1199
Query 1199 CTGGCTCATCT 1209
|||||||||||
Sbjct 1200 CTGGCTCATCT 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5