BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470222
Length=2345
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02640.1 | Symbols: BXL2, ATBXL2 | beta-xylosidase 2 | chr1:... 3838 0.0
> AT1G02640.1 | Symbols: BXL2, ATBXL2 | beta-xylosidase 2 | chr1:564205-567769
FORWARD LENGTH=2584
Length=2584
Score = 3838 bits (2078), Expect = 0.0
Identities = 2243/2325 (96%), Gaps = 2/2325 (0%)
Strand=Plus/Plus
Query 1 AAAGAAATGATTCTCCACAAAATGGCGTTCTTGGCCGCTATTCTCTTCTTCTTGATAAGC 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 83 AAAGAAATGATTCTCCACAAAATGGCGTTCTTGGCCGTTATTCTCTTCTTCTTGATAAGC 142
Query 61 AGCAGCAGCGTTTGCGTTCAGAGCCGCGAAACGTTTGCTTGCGATATAAAGGACGCAGCA 120
|||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 143 AGCAGCAGCGTTTGCGTTCATAGCCGTGAAACGTTTGCTTGCGATACAAAGGACGCAGCA 202
Query 121 ACAGATACACTGAGATTCTGTCAACTATCAGTTCCGATACCGGAGAGAGTGAAG-GATTT 179
|||| ||||||||||||||| || || |||||||| |||||||||||||| || |||||
Sbjct 203 ACAGCTACACTGAGATTCTGCCAGCTTTCAGTTCCTATACCGGAGAGAGT-CAGAGATTT 261
Query 180 GATCGGACGGTTGACATTGGTCGAGAAAGTGAGCTTGTTAGGGAACACTGCGGCGGCGAT 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 262 GATCGGACGGTTGACATTGGCCGAGAAAGTGAGCTTGTTAGGGAACACTGCGGCGGCGAT 321
Query 240 ACCACGGCTAGGAATCAAAGGGTACGAGTGGTGGTCGGAGGCTTTACACGGCGTTTCAAA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 ACCACGTCTAGGAATCAAAGGGTACGAGTGGTGGTCGGAGGCTTTACACGGCGTTTCAAA 381
Query 300 TGTAGGTCCCGGTACTAAGTTCGGTGGGGTTTACCCTGCAGCCACCAGTTTCCCTCAAGT 359
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TGTGGGACCCGGTACTAAGTTCGGTGGGGTTTACCCTGCAGCCACCAGTTTCCCTCAAGT 441
Query 360 CATCACCACCGTTGCTTCTTTCAATGCCTCCTTGTGGGAATCCATCGGACGGGTTGTATC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 442 CATCACCACCGTTGCTTCTTTCAATGCCTCCTTGTGGGAATCCATCGGACGGGTTGTGTC 501
Query 420 AAATGAGGCCAGAGCCATGTACAACGGTGGTGTTGGTGGGCTTACTTATTGGAGCCCAAA 479
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 502 AAATGAGGCCAGGGCCATGTACAACGGTGGAGTTGGTGGGCTTACGTATTGGAGCCCAAA 561
Query 480 CGTTAACATATTGCGGGACCCACGTTGGGGACGTGGACAGGAAACTCCCGGTGAAGATCC 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CGTTAACATATTGAGGGACCCACGTTGGGGACGTGGACAGGAAACTCCCGGTGAAGATCC 621
Query 540 AGTCGTAGCCGGTAAATACGCAGCGAGCTACGTCAGAGGTTTACAGGGAAACGACCGTAG 599
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 622 AGTAGTAGCCGGTAAATACGCAGCGAGCTACGTCAGAGGGTTACAGGGAAACGACCGTAG 681
Query 600 CCGGTTAAAAGTAGCTGGTTGTTGCAAACATTTCACAGCTTACGATCTTGATAATTGGAA 659
||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 682 CCGGTTAAAAGTAGCTGCTTGTTGCAAACATTTCACAGCTTACGATCTCGATAACTGGAA 741
Query 660 CGGCGTCGATAGATTCCATTTCAACGCTAAGGTAAGCAAGCAAGACATAGAGGACACGTT 719
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 742 CGGCGTCGACAGATTCCATTTCAACGCTAAGGTAAGCAAGCAAGACATAGAAGACACGTT 801
Query 720 CGACGTACCGTTCCGTATGTGTGTTAAAGAAGGTAACGTTGCGAGCATTATGTGTTCGTA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CGACGTACCGTTCCGTATGTGTGTTAAAGAAGGTAACGTTGCGAGCATTATGTGTTCGTA 861
Query 780 CAATGAAGTTAATGGTGTTCCCACATGTGCTGATCCTAATCTCCTAAAGAAGACCATACG 839
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 862 CAATCAAGTTAATGGTGTTCCTACATGTGCTGATCCTAATCTCCTCAAGAAGACCATACG 921
Query 840 CAATCAATGGGGTCTCAACGGGTATATCGTGTCTGATTGTGACTCTGTCGGTGTTTTATA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 922 CAATCAATGGGGTCTCAACGGGTATATCGTGTCTGATTGTGACTCTGTCGGTGTTTTGTA 981
Query 900 CGATACGCAACATTACACTGGTACTCCTGAAGAAGCTGCTGCTGATTCCATCAAAGCTGG 959
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 982 CGATACCCAACATTACACTGGTACTCCTGAAGAAGCTGCCGCTGATTCCATCAAAGCTGG 1041
Query 960 CTTGGATTTAGATTGTGGGCCGTTTCTTGGAGCCCATACAATTGATGCGGTGAAGAAAAA 1019
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1042 CTTGGATTTAGATTGTGGGCCATTTCTAGGAGCCCATACAATCGATGCGGTGAAGAAAAA 1101
Query 1020 CTTGTTGCGTGAGTCTGACGTTGACAATGCCTTAATCAACACGCTAACAGTCCAAATGAG 1079
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1102 CTTGTTGCGTGAGTCCGATGTTGATAATGCCTTAATCAACACGCTAACAGTCCAAATGAG 1161
Query 1080 ACTGGGAATGTTTGATGGCGATATAGCGGCTCAACCGTACGGACACCTTGGACCGGCACA 1139
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 ACTAGGAATGTTTGATGGCGATATAGCGGCTCAACCGTACGGACACCTTGGACCGGCACA 1221
Query 1140 CGTGTGTACACCGGTTCACAAAGGACTAGCTCTCGAAGCAGCTCATCAAGGAATCGTCCT 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1222 CGTGTGTACACCGGTTCACAAAGGACTAGCTCTCGAAGCAGCTCAACAAGGAATCGTCCT 1281
Query 1200 ACTCAAGAATCACGGCTCGTCTCTACCTCTCTCAAGCCAACGTCACCGAACTGTCGCCGT 1259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 ACTCAAAAATCACGGCTCGTCTCTACCTCTCTCAAGCCAACGTCACCGAACTGTCGCCGT 1341
Query 1260 AATTGGACCTAATTCTGACGCTACAGTCGCAATGATTGGTAATTATGCAGGAATTGCTTG 1319
||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 1342 AATTGGACCTAATTCAGACGCTACGGTCACAATGATTGGTAATTATGCAGGGGTTGCTTG 1401
Query 1320 TGGATATACCAGTCCGGTTCAAGGAATTACCGGTTATGCACGAACGGTTCACCAAAAGGG 1379
|||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||
Sbjct 1402 TGGATATACCAGTCCGGTTCAAGGTATTACCGGTTATGCTCGAACCATTCATCAAAAGGG 1461
Query 1380 TTGCGTGGACGTACACTGCATGGACGATAGATTGTTCGATGCCGCGGTTGAAGCTGCTCG 1439
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1462 TTGCGTGGACGTACACTGCATGGATGATAGATTGTTCGATGCCGCGGTTGAAGCGGCTCG 1521
Query 1440 TGGAGCTGATGCGACAGTTCTTGTGATGGGTTTGGATCAGTCTATTGAAGCTGAGTTTAA 1499
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1522 TGGAGCTGATGCGACGGTTCTTGTGATGGGTTTGGATCAGTCTATTGAAGCGGAGTTCAA 1581
Query 1500 GGACAGAAACAGTTTGCTTTTGCCTGGGAAACAACAAGAGCTTATCTCTAGAGTTGCTAA 1559
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1582 GGACAGAAACAGTTTGCTTTTGCCTGGGAAACAACAAGAGCTTGTCTCTAGAGTTGCTAA 1641
Query 1560 GGCCTCTAAAGGCCCAGTTATATTAGTATTGATGTCTGGTGGGCCTATCGATATATCTTT 1619
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1642 GGCCGCTAAAGGCCCAGTTATCTTAGTATTGATGTCTGGTGGGCCTATCGATATATCTTT 1701
Query 1620 TGCTGAGAAGGATCGGAAAATTCCAGCAATTGTTTGGGCCGGGTATCCGGGTCAAGAAGG 1679
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1702 TGCTGAGAAGGATCGGAAAATTCCAGCGATTGTTTGGGCCGGGTATCCGGGTCAAGAAGG 1761
Query 1680 TGGTACCGCAATCGCCGATATCTTATTCGGCAGTGCTAATCCCGGAGGAAAGCTTCCGAT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 TGGTACCGCAATCGCCGATATCTTATTCGGCAGTGCTAATCCCGGAGGAAAGCTTCCGAT 1821
Query 1740 GACTTGGTATCCGCAAGATTATTTAACCAATTTACCAATGACCGAAATGTCGATGCGACC 1799
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1822 GACTTGGTATCCGCAAGATTATTTAACCAATTTACCAATGACAGAAATGTCGATGCGGCC 1881
Query 1800 GATCCATTCGAAGCGGATTCCGGGTCGGACTTACCGGTTCTACGACGGTCCGGTTGTTTA 1859
| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1882 GGTCCATTCGAAGCGGATCCCGGGTCGGACTTACCGGTTCTACGACGGTCCAGTTGTTTA 1941
Query 1860 CCCGTTCGGGCATGGTTTGAGTTACACGCGCTTTACTCACAGCATAGCCGACGCGCCAAA 1919
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1942 CCCGTTCGGGCATGGTTTGAGTTACACGCGCTTTACTCACAACATAGCCGACGCGCCAAA 2001
Query 1920 AGTGATTCCTATAGCTGTTCGTGGTAGAAACGGCACCGTTTCAGGGAAATCAATCCGTGT 1979
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2002 AGTGATTCCTATAGCTGTTCGTGGAAGAAACGGCACCGTTTCAGGGAAATCAATCCGTGT 2061
Query 1980 CACGCACGCTAGGTGTAATCGTCTTTCTCTCGGTGTCCATGTGGATGTTACTAACGTTGG 2039
||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 2062 GACGCACGCTAGGTGTGATCGTCTCTCTCTCGGAGTCCACGTGGAAGTTACTAACGTTGG 2121
Query 2040 CTCAAGAGATGGGACTCACACAATGCTTGTGTTCTCGGCTCCGCCGGGTGGAGAGTGGGC 2099
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2122 CTCGAGAGATGGGACGCACACAATGCTTGTGTTCTCGGCTCCGCCGGGTGGAGAATGGGC 2181
Query 2100 TCCGAAGAAACAGCTAGTTGCTTTCGAGAGAGTACACGTGGCGGTTGGAGAGAAGAAGCG 2159
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2182 TCCGAAGAAACAGCTGGTTGCTTTTGAGAGAGTACACGTGGCGGTTGGGGAGAAGAAGCG 2241
Query 2160 TGTACAGGTGAATATACACGTGTGTAAGTATTTAAGTGTAGTGGACCGAGCCGGGAACCG 2219
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2242 TGTGCAGGTGAATATACACGTGTGTAAGTATTTAAGTGTAGTGGACCGAGCCGGGAACCG 2301
Query 2220 AAGGATTCCGATCGGTGATCATGGGATTCATATTGGAGATGAGAGTCATACGGTGTCGCT 2279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2302 AAGGATTCCGATCGGTGATCATGGGATTCATATTGGAGATGAGAGTCATACGGTGTCGCT 2361
Query 2280 TCAAGCTTCTACTCTTGGAGTCATCAAGTCTTGACTCTGTTTTTT 2324
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2362 TCAAGCTTCTACTCTTGGAGTCATCAAGTCTTGACTCTGTTTTTT 2406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116415063855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5