BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470223
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02650.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2366 0.0
> AT1G02650.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:568704-570418 FORWARD LENGTH=1542
Length=1542
Score = 2366 bits (1281), Expect = 0.0
Identities = 1459/1543 (95%), Gaps = 20/1543 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATTCATCCTTGGTGGAAACGTAACAGAAAGAAAGTGGACAAGTACATGAAGAAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATTCATCCTTGGTGGAAACGTAACAGAAAGAAAGTGGACAAGTACATGAAGAAT 60
Query 61 GCGAAGGATTTGATAACGAGCCAAGATCCAAACGACATCGTATCAGCTCTAAGCCTCTTG 120
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 GCGAAGGATTTGATAACCAGCCAAGATCCAAACGACATCGTATCAGCTCTCAGTCTCTTG 120
Query 121 AATTCAACGCTTTCCATCTCTCCTCACCACGAACTCGCTCTGGAACTCAAAGCCAGATCG 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTCAACGCTTTCTATCTCTCCTCACCACGAACTCGCTCTGGAACTCAAAGCCAGATCG 180
Query 181 CTTCTCTACCTTCGTCGTTTCGAAGACGTCGCCGTTTTGCTTCACGATTACATTCCCAGT 240
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 181 CTTCTCTACCTTCGTCGTTTCAAAGACGTGGCCGTTTTGCTTCACAATTACATTCCCAGT 240
Query 241 CTTAGAATCGATAACGAAGATGTCAGCAGTGTCGTCGTCGCTTCATCGGAGCTTTCCTCT 300
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 241 CTTAGAATCGATAACGAAGATGTCAGCAGTGTCTTCGCCGCTTCATCGGAGCTTTCCTCT 300
Query 301 CTCAGGCCTCTTCTTCCGAGTGGCTCACCGAGTCATGACTCGTCGTTCAAGTGTTTCTCT 360
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCATGCTTCTTCTTCCGAGTGGCTCACCGAGTCATGACTCGTCGTTCAAGTGTTTCTCT 360
Query 361 TATTCCTACTTGAAGAAGAAGGTCATGGCAGGGTTAAGTAATAATTCTGAAGTACAAGGG 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TATTCCTACTTGAAGAAGAAGGTCATGGCAGGGTTAAGTAATAATTCTCAAGTACAAGGG 420
Query 421 CAATGGAGATACTTGGTTTTGGGTCAAGCTTGTTACCATCTAGGTCTAATGGAAGACGCG 480
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||
Sbjct 421 CAATGGAGATACTTGGTTTTGGGCCAAGCTTGTTACCATCTGGGTTTAATGGATGACGCG 480
Query 481 ATGATCCTACTCCAAACCGGTAAACGCCTTGCCACGGCGGAGCTCCGCCGCGAAAGCATT 540
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 ATCATCCTACTCCAAACCGGTAAACGCCTAGCCACGGCGGAGCTCCGCCGCGAAAGCATT 540
Query 541 TGCTGGTCCGACGATAGCTTCATCCTTTTCACCTCCGAATCTCAGCCACGACCATTCACC 600
||||||||||| |||||||||| ||||| |||||||||||||||||||| |||| |||||
Sbjct 541 TGCTGGTCCGAAGATAGCTTCAACCTTTCCACCTCCGAATCTCAGCCACAACCAATCACC 600
Query 601 GAATCCGAGATCGTATCGCAAATGCTCTCCCAAATCAAGCTCTTCCTCCGACGGCGCACG 660
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GAATCCGAGATCGTATCGCAAATGCTCTCCCAAACCAAGCTCTTCCTCCGACGGCGCACA 660
Query 661 GCGGCGCTCGCAGCACTCGACGCCGGTCTCTACTCTGAATCCATCCGCCATTTCTCTAAG 720
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GCGGCGCTCGCAGCACTTGACGCCGGTCTCTACTCCGAATCCATCCGCCATTTCTCTAAG 720
Query 721 ATCATAGACAGCCGTCGCAGTGCACCGCAGAATTTCCTCGTCGATTGCTTAATCCGTCGT 780
||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||
Sbjct 721 ATCATAGACAGCCGTCGTGGTGCACCGCAGAGTTTCCTCGTCTATTGCTTAATTCGTCGC 780
Query 781 GCCTCCGCCTACAAATCCGCCAGCCGAATCGCGGATTCCATCGCCGATTGCAACTTAACC 840
|||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 781 GCCTTCGCCTATAAATCCGCCGGCCGAATCGCGGATTCCATCGCCGATTGCAACTTAATC 840
Query 841 CTAGCCTTAGATCCGTCGTGCCTAGAAGCTTTAGAAACCAGAGCCGAATTGTTCCGATCG 900
|||||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 841 CTAGCCCTAGAACCGTCGTGCATAGAAGCTTTAGAAACCAGAGCTGAATTGTTCCGATCG 900
Query 901 ATACGGTGTTTCCCCGACTCGCTTCACGATCTCGAACACTTGAAACTCCTCTTCAATTCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATACGGTGTTTCCCCGACTCGCTTCACGATCTCGAACACTTGAAACTCCTCTTCAATTCA 960
Query 961 ATTTTACGTGACCGGTCATTAACCGGCCCGGTTTGGAAACGGCATAATGTCCGGTACAGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATTTTACGTGACCGGTCATTAACCGGCCCGGTTTGGAAACGGCATAATGTCCGGTACAGA 1020
Query 1021 GAAATCCCGGCAAAATTATGTGAATTAACCTCTAATATCAAACAAATGAAGGAGAAAATT 1080
|||||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 1021 GAAATCCCGGGAAAATTATGTGTATTGACCACTAATATCAAACAAATGAAGGAGAAAATT 1080
Query 1081 ACAAACGGAAAAAACGGTAATGAGGATTATTACTCTTTGATGGGAATTGAACGTGGGTGC 1140
|||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 ACAAACAGAGAAAACGGCAATGAGGATTATTACTCATTGATGGGAATTGAACGTGGGTGC 1140
Query 1141 TCGAGATCGGAGCTGAACCGGGCGTACTTGTTACTGAATCTAAGACATAAATCGGAGAGA 1200
|||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1141 TCGAGATCGGAGCTGAACAGGGCTTACTTGTTACTGAATCTAAGATATAAATCGGAGAGA 1200
Query 1201 TCAATGACGTCTATAGACCGGTTCGATATAATCGATGAGGAAGAATTAGCTTCGGTTAAA 1260
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1201 TCAATGACGTCTATAGACCGGTTCGATATAATCGATGAGCAAGAATTAGTTTCGGTTAAG 1260
Query 1261 AACCGAGCTAGAATGTCAACGTTGTTACTCTATAGATTGATCCAGAAGGGATATTACGCC 1320
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AACCGAGCGAGAATGTCAACGTTGTTACTCTATAGATTGATCCAGAAGGGATATTACGCC 1320
Query 1321 GTAATGAGTGACATTGAAACGGTAGAAGCGGTA-AAAGCGGTT--A-TCGATAATCGACG 1376
||| |||||||||||||||| |||||||||| | ||||||||| | |||||||||||||
Sbjct 1321 GTATTGAGTGACATTGAAACCGTAGAAGCGG-ACAAAGCGGTTGCAATCGATAATCGACG 1379
Query 1377 GATTGAAACGCCGATGGATGGTAACAAAGCGGTGGCAGTGGCGGTTGTGAGGAAGAGTAA 1436
|||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 1380 GATTGAAACGCCGATGGATGGTAATAAAGCGGTGGCAATGACGGTTGTGAGGAAGAGTAA 1439
Query 1437 CG-----T--G--GT--T----AAAGGAGTGTTTTGTAGAGATATGGTGGCGGTTGGGAC 1481
|| | | || | ||||||||||||||||||||||||| |||||||||||
Sbjct 1440 CGACAAGTTAGATGTGGTGGTTAAAGGAGTGTTTTGTAGAGATATGGCGGCGGTTGGGAG 1499
Query 1482 TTTGATTTCCCGTGCCGGTTTAAGACAACCAATTACGGTTTAG 1524
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTTGATTTCCCGTGCCGGTTTAAGACAACCAATTACGGTTTAG 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5