BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470227
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61710.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 556 6e-158
AT1G02681.1 | Symbols: | Pseudogene of AT4G02160 | chr1:582413... 281 4e-75
> AT5G61710.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G02160.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:24799878-24800680 FORWARD LENGTH=803
Length=803
Score = 556 bits (301), Expect = 6e-158
Identities = 533/635 (84%), Gaps = 55/635 (9%)
Strand=Plus/Plus
Query 1 TTTCTTCAAGAAAACAAAAATCTCTCTCCCTGGAGAAGA-TTTTTGATTTTCCTT-AAAC 58
|||||||||||||||||||||||| |||| |||||||| |||||| |||||||| ||||
Sbjct 23 TTTCTTCAAGAAAACAAAAATCTCCCTCCAGGGAGAAGATTTTTTGTTTTTCCTTAAAAC 82
Query 59 TTTTCTTCATCTTTCTGATATTA-ACAA-AAGAAGAGAATGGTGAGCAATTAGAGATAGA 116
||| ||||||||||||| | |||| || | |||||||||| ||||||||||||||
Sbjct 83 TTTAAGTCATCTTTCTGAT-GGAGACAAGAA-ATCAGAATGGTGATCAATTAGAGATAGA 140
Query 117 G---A--AAATAAACAAGACG---ACC---AT---GAAGAAGAAAAAGCCATCACGTGGG 162
| | |||||||||||||| ||| || ||||||||||||| |||||||||||
Sbjct 141 GCAAATTAAATAAACAAGACGACTACCATGATGAAGAAGAAGAAAAAGTCATCACGTGGG 200
Query 163 ATGCACATGTTCTCCGTCGTCATGTTCATGCTCCGTCGTCGCCGGAGGAGAAAGACCTTC 222
||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 201 ATGCACATGTTCTCCGTCGTCATGTTCATGCTCCGTCGTCGCC------G---GACCTCC 251
Query 223 AACACCAGGTTTTGGCGACGAGTTGTTGAGTCCGTACCG-ACAG--AGATGGGAGGA-GA 278
||||||||||| ||||| || ||||||||||||||| || | || | | || | |
Sbjct 252 AACACCAGGTTCTGGCGGCGTGTTGTTGAGTCCGTA-CGTAAAGTCCGTTCCGA-AATTA 309
Query 279 CGGTGGtgataatga-taacgat--gatgatgatgatgatgatgatTCCG--GA-GATCG 332
|| | || | ||| | ||| || || || |||| |||| || | || |||||
Sbjct 310 CGATAATGCCAGTGACGGA-GATGGGAGGA-GACGATGGTGATAATGAAGTTGATGATCG 367
Query 333 TTTATCGGAGGCTATGGAGGTTTTCACGGCGGCTTCCTCTTCATCATCATCAGGAATCTC 392
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 368 TTTATCGGAGACTATGGAGGTTTTCACGGCGCCTTCCTCTTCATCATCATCAGGAATCTC 427
Query 393 GGGATATGGATCAGCCATGTCCTTACGGGATTTGGATTATCCTTATGATGATGATATTGA 452
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct 428 GGGATATGGATCAGCCATGTCCTTACGTGATTTGGACTATCCTTATGATGATGATA-T-- 484
Query 453 TGAGGAAGAAGATGAATGTTATAGTGATGTCGAAGGAGGAGATGATATGATTGATGAGAA 512
| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 485 T---------GATGAATGTTATAGTGATGTCCAAGGAGGAGATGATATGATTGATGAGAA 535
Query 513 AGCTGAGGAATTCATCGTGAGGTTCTATGCGCAAATGAAGATGCAAAATCAGGTTTACAC 572
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGCTGAGGAATTCATCGTCAGATTCTATGCGCAAATGAAGATGCAAAATCAGGTTTACAC 595
Query 573 TGATCGTTGCAAAGCCAAAGGGATAATGATGAATT 607
||||||||||||||||||||||||| |||||||||
Sbjct 596 TGATCGTTGCAAAGCCAAAGGGATACTGATGAATT 630
> AT1G02681.1 | Symbols: | Pseudogene of AT4G02160 | chr1:582413-582922
FORWARD LENGTH=510
Length=510
Score = 281 bits (152), Expect = 4e-75
Identities = 280/333 (84%), Gaps = 43/333 (13%)
Strand=Plus/Plus
Query 260 CGACAGAGATGGGAGGAGACGGTGGtgataatgataacgatgatgatgatgatgatgatg 319
||||||| ||||||||||||| ||||||||||||| | |||| | ||||||||||
Sbjct 220 CGACAGAAATGGGAGGAGACGATGGTGATAATGAT----A--ATGA--A-GATGATGATG 270
Query 320 atTCCGGA-GATCGTTTATCGGAGGCTATGGAGGTTTTCACGGCGGCTTCCTCTTCATCA 378
||||| || | ||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 271 ATTCC-GAGGGTCGTTTATCAGAGACTATGGAGGTTTTCACGGCGGCTTCATCTTCATCA 329
Query 379 TCATCAGGAATCTCGGGATATGGATCAGCCATGTCCTTACGGGATTTGGATTATCCTTAT 438
||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 330 TCATCAGGAATCTCGGGATATGGATCAGCCATGTCCTTA-----T----AT--------- 371
Query 439 GATGATGATATTGATGAGGAAGAAGATGAATGTTATAGTGATGTCGAAGGAGGAGATGAT 498
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 372 GATGATGATATTGATGAGGAAGAAGATGAATGTTATAGTGATGTGGAAGGAGGAGACGAT 431
Query 499 ATGATTGATGAGAAAGCTGAGGAATTCATCGTGAGGTTCTATGCGCAAATGAAGATGCAA 558
|||||||||||||||||||||| ||| | || | || || |||||||||||
Sbjct 432 ATGATTGATGAGAAAGCTGAGG--TTC-TA-TG-----CAAT----AA-TGAAGATGCAA 477
Query 559 AATCAGGTTTACACTGATCGTTGCAAAGCCAAA 591
|||||||||||||||||||||||||||||||||
Sbjct 478 AATCAGGTTTACACTGATCGTTGCAAAGCCAAA 510
Score = 178 bits (96), Expect = 6e-44
Identities = 120/131 (92%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 130 ACGACCATGAAGAAGAAAAAGCCATCACGTGGGATGCACATGTTCTCCGTCGTCATGTTC 189
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4 ACGAGCATGAAGAAGAAAAAGTCATCACGTGGGATGCACATGTTCTCCGTCGTCATGTTC 63
Query 190 ATGCTCCGTCGTCGCCGGAGGAGAAAGACC-TTCAACACCAGGTTTTGGCGACGAGTTGT 248
||||| ||||| |||||| ||||||| ||| |||||||||||||| ||||| ||||| ||
Sbjct 64 ATGCTTCGTCGCCGCCGG-GGAGAAA-ACCCTTCAACACCAGGTTCTGGCGGCGAGTCGT 121
Query 249 TGAGTCCGTAC 259
| |||||||||
Sbjct 122 TAAGTCCGTAC 132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5