BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470228
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1539 0.0
> AT1G02700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G02140.1); Has 49 Blast
hits to 49 proteins in 21 species: Archae - 0; Bacteria
- 0; Metazoa - 10; Fungi - 6; Plants - 29; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink). | chr1:588329-589480
FORWARD LENGTH=1030
Length=1030
Score = 1539 bits (833), Expect = 0.0
Identities = 948/1003 (95%), Gaps = 10/1003 (1%)
Strand=Plus/Plus
Query 15 GATGATGATGCAATCCCGATTATTAGCGTTTGCTTCTGCGGCGCGTTCCCGTGTTCGACC 74
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 38 GATGATGATGCAATCCCGATTATTAGCGTTTGCTTCAGCGGCGCGTTCACGTGTTCGACC 97
Query 75 AATCGCTCAAAGGCGTTTAGCGTTTGGATCATCCACGTCTGGCCGCACCGCTGATCCAGA 134
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 98 AATCGCTCAAAGGCGTTTAGCGTTTGGATCATCCACGTCTGGTCGCACAGCTGATCCAGA 157
Query 135 GATCCATTCCGGTAACGATGGAGCTGATCCAGCTATTTATCCGAGAGACCCTGAAGTTAT 194
||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||
Sbjct 158 GATCCATGCCGGTAACGATGGAGCCGATCCAGCTATCTATCCGAGAGACCCTGAAGGTAT 217
Query 195 GGATGATGTTGCAAACCCTAAAACGGCGGCGGATGAAATCGTAGACGATACTCCACGACC 254
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 218 GGATGATGTTGCAAACCCTAAAACGGCGGCGGAAGAAATCGTAGACGATACTCCCCGACC 277
Query 255 GAGTTTAGAAGAGCAACCGCTTGTACCGCCTAAATCTCCACGCGCCACCGCACATAAGCT 314
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 278 GAGTTTAGAAGAGCAACCGCTTGTACCGCCGAAATCTCCACGCGCCACTGCGCACAAGCT 337
Query 315 AGAGAGTACTCCTGTTGGTCACCCGTCAGAACCTCATTTCCAACAGAAACGAAAAAACTC 374
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 AGAGAGTACTCCCGTTGGTCACCCGTCAGAACCTCATTTCCAACAGAAACGAAAAAACTC 397
Query 375 CACCGCCTCTCCGTCTCCGCCGTCGCTTGATTCTGTGAGCTGTGCTGGTCTAGACGGCTC 434
||||| || |||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 398 CACCG---CT---TCTCCGCCGTCGCTTGATTCCGTGAGCTGTGCTGGTTTAGACGGTTC 451
Query 435 ACCGTGGCCAAGAGACGAAGGAGAAGCGGAGGAGCAGAGGCGGAGAGAAGGTGAAACAGA 494
||| ||||| |||||||||||||||| ||| ||||| ||||| ||||||| |||||||||
Sbjct 452 ACCATGGCCGAGAGACGAAGGAGAAGTGGAAGAGCAAAGGCGAAGAGAAGATGAAACAGA 511
Query 495 GAGCGACCAAGAGTTTTACAAACACCACAAAGCTTCTCCGTTATCGGATATTGAATTCGC 554
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 512 GAGTGACCAAGAGTTTTACAAACACCACAAAGCTTCTCCGTTATCGGAGATTGAATTCGC 571
Query 555 CGATACTCGGAAACCTATTACGCAAGCTACTGATGGAACGGCGTACGCAGCCGGGAAAGA 614
|||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||
Sbjct 572 CGATACTCGGAAACCTATTACGCAAGCTACCGATGGAACTGCCTACCCAGCCGGGAAAGA 631
Query 615 TGTGATCGGATGGTTGCCTGAGCAGCTAGACACGGCGGAAGAATCTTTGATGAAAGCAAC 674
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TGTGATCGGATGGTTACCGGAGCAGCTAGACACGGCGGAAGAATCTTTGATGAAAGCAAC 691
Query 675 GATGATATTCAAACGCAACGCAGAACGTGGCGATCCTGAAACGTTTCCTCATTCTAGAAT 734
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 AATGATATTCAAACGCAACGCAGAACGTGGCGATCCTGAAACGTTTCCTCATTCTAGAAT 751
Query 735 CTTAAGAGAAATGAGAGGCGAGTGGTTTTAAACTAAAGACTACAATAAAATGTTGAAAAA 794
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 752 CTTAAGAGAAATGAGAGGCGAGTGGTTTTAAACTAAAGACCACAATAAAATGTT-AAGAA 810
Query 795 GTGTCTGAATAAACTTTTGTCAATTAGCTTCATTAAGACATTTTGGTTCCTTACCAAAGT 854
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 811 GTGTCTGAATAAACTTTTGTCAATTAGCTTCATTGAGACATTTTGGTTCCTTACGAAAGT 870
Query 855 GAACAAAGCCTCTTTATATCTTCCAAATCTTTAGAAACCCTAAAATCAAGAGAATTTGTT 914
||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||
Sbjct 871 GAACAAAGCCTCTTTATGTC--CCAAATCTCTAGAAACCCTAAAATCAAAAGAATTTGTT 928
Query 915 CGAACATTATGGATTACAGTTATGATATGGTCCAAAAAAGGGTTTTGTTCTTCAATCCAA 974
|| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 929 CGTACATTATGGATTACAGTTATGGTATGGTCCAAAAAAGGGTTTTGTTCTTGAATC-AA 987
Query 975 AGCTGTAAAATTAAAATGGTATCAGATTCCAAAGTTATTGCTT 1017
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 988 AGCTGTAAAATTTAAATGGTATCAGATTCCAAAGTTATTGCTT 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5