BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470229

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02710.1 | Symbols:  | glycine-rich protein | chr1:589706-58...   261    2e-69


> AT1G02710.1 | Symbols:  | glycine-rich protein | chr1:589706-589996 
REVERSE LENGTH=291
Length=291

 Score =  261 bits (141),  Expect = 2e-69
 Identities = 247/292 (85%), Gaps = 32/292 (11%)
 Strand=Plus/Plus

Query  1    ATGGAAGCAGATATCCCCGGGGACGCTTCTGCGGCTGTGATAATGATCGGTGGTCTCGGC  60
            ||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGCAGAAATCGTCGGGGAAGCTTCTGCGGCTGTGATAATGATCGGTGGTCTCGGC  60

Query  61   TTATTCGGAACGCATTCATTGCAAGCCGGCGGCATcggcggtggaagcgg-a-gg---ag  115
            ||||||||||| |||||||||||||||||||||| ||||||||||||||| | ||   ||
Sbjct  61   TTATTCGGAACACATTCATTGCAAGCCGGCGGCAACGGCGGTGGAAGCGGCAAGGGGCAG  120

Query  116  -g---a---ggtggtgg-----a-g-a--aggaggag--g----tgg---agaaggcggt  150
             |   |   ||||||||     | | |  ||||||||  |    |||   ||||||||||
Sbjct  121  TGGTTACATGGTGGTGGTGGTGAAGGAGGAGGAGGAGAAGGAGGTGGTGGAGAAGGCGGT  180

Query  151  ggcggaCAGAAAATCTCTA-GCGGGGGTGGAGGCGGTGGTAGCGGTGGAGGACATAGAAT  209
            ||||||||||||||||||| | |||||||||||||||||||||||||||||||| || | 
Sbjct  181  GGCGGACAGAAAATCTCTAAG-GGGGGTGGAGGCGGTGGTAGCGGTGGAGGACAAAGGAG  239

Query  210  TTCTAGTGGTGGCGGAGGCGGTGGAGGTGAAGGTGACGGAGGAGGTGGCTGA  261
            |||||||||||||||||| || ||||| ||||| ||||||||||||||||||
Sbjct  240  TTCTAGTGGTGGCGGAGGAGGCGGAGGGGAAGGCGACGGAGGAGGTGGCTGA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5