BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470231
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02720.1 | Symbols: GATL5 | galacturonosyltransferase 5 | ch... 2156 0.0
AT4G02130.1 | Symbols: GATL6, LGT10 | galacturonosyltransferase... 697 0.0
AT1G24170.1 | Symbols: GATL8, LGT9 | Nucleotide-diphospho-sugar... 134 3e-30
> AT1G02720.1 | Symbols: GATL5 | galacturonosyltransferase 5 |
chr1:591826-594236 FORWARD LENGTH=1775
Length=1775
Score = 2156 bits (1167), Expect = 0.0
Identities = 1266/1314 (96%), Gaps = 5/1314 (0%)
Strand=Plus/Plus
Query 1 AAACGCAGAGGAGAAGAAAAGAGAGAAGGCGCAGAGTAGCATTGACATGCGAAATGTGCC 60
||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 117 AAAAGCAGAGGAGAAGAGAAGAGAGACGGCGCAGAGTAGCATTGACATGCGAAATGTGCC 176
Query 61 TCTCAGGGTTCTTATCTTACGCCTGTTTCAATCTCTTCCCCACCATGAAAGTTTTCTGAT 120
|||||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 177 TCTCAGAATTCTTATCCTACGCCTGTTTCAATTTCTTCTCCACCATGAAAGTTTTCTGAT 236
Query 121 TGCTGTTTCCTCTGAAA-TTTGAAGCTTCGTAGTTTCTTCTGCATT-CTCGCAATGCATT 178
|||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 237 TGCTCTTTCCTCAGAAATTTTGAAGCTTCGTAGTTTCTTCTGCATTCCTCGCAATGCATT 296
Query 179 GGATTACGAGATTCTCCGCCATCTTCGCTGCCGCATTAGCCATGATTCTCCTTTCTCCTT 238
|||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||
Sbjct 297 GGATTACGAGATTCTCTGCTTTCTTCTCCGCCGCATTAGCCATGATTCTCCTTTCTCCTT 356
Query 239 CACTCCAATCCTTTTCTCCGGCGGCAGCTATCCGATCATCTCACCCCTACGCCGACGAAT 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CGCTCCAATCCTTTTCTCCGGCGGCAGCTATCCGATCATCTCACCCCTACGCCGACGAAT 416
Query 299 TCAAACCACAACAAAACTCCGATCACTCCTCCTTCAGAGAATCTCCAATGTTCCGTAATG 358
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 417 TCAAACCCCAACAAAACTCCGATTACTCCTCCTTCAGAGAATCTCCAATGTTCCGTAACG 476
Query 359 CCGAACAATGCAGATCTTCCGGCGAAGATTCCGGCGTCTGTAACCCTAATCTCGTCCACG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCGAACAATGCAGATCTTCCGGCGAAGATTCCGGCGTCTGTAACCCTAATCTCGTCCACG 536
Query 419 TAGCCATCACACTCGACATCGATTACCTCCGTGGCTCAATCGCAGCCGTGAATTCAATCC 478
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 537 TAGCCATCACTCTCGACATCGATTACCTCCGTGGCTCAATCGCAGCCGTCAATTCGATCC 596
Query 479 TCCAGCACTCAATGTGTCCTCAAAGCGTCTTCTTCCACTTCCTCGTCTCCTCCGAGAT-T 537
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 597 TCCAGCACTCAATGTGCCCTCAAAGCGTCTTCTTCCACTTCCTCGTCTCCTCCGAG-TCT 655
Query 538 CAAAACCTAGAATCTCTGATTCGTTCAACTTTCCCCAAATTGACGAATCTCAAAATTTAC 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 656 CAAAACCTAGAATCTCTGATTCGTTCTACTTTCCCCAAATTGACGAATCTCAAAATTTAC 715
Query 598 TATTTTGCCCCTGAGACCGTACAGTCTTTGATTTCATCTTCCGTGAGACAAGCCCTAGAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TATTTTGCCCCTGAGACCGTACAGTCTTTGATTTCATCTTCCGTGAGACAAGCCCTAGAG 775
Query 658 CAACCGTTGAATTACGCCAGAAATTACTTGGCGGATCTGCTCGAGCCTTGCGTTAAGCGA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CAACCGTTGAATTACGCCAGAAATTACTTGGCGGATCTGCTCGAGCCTTGCGTTAAGCGA 835
Query 718 GTCATCTACTTGGATTCGGATCTCGTCGTCGTTGATGATATCGTCAAGCTTTGGAAAACG 777
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 836 GTCATCTACTTGGATTCGGATCTCGTCGTCGTCGATGATATCGTCAAGCTTTGGAAAACG 895
Query 778 GGTTTAGGCCAGAGAACAATCGGAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GGTTTAGGCCAGAGAACAATCGGAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATAC 955
Query 838 TTCACCGGAGGTTTTTGGTCAGATAAGAGGTTTAACGGGACGTTCAAAGGGAGAAACCCT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 956 TTCACCGGAGGTTTTTGGTCAGATAAGAGGTTTAACGGGACGTTCAAAGGGAGGAACCCT 1015
Query 898 TGTTACTTCAATACTGGTGTAATGGTGATTGATTTGAAGAAGTGGAGACGATTTAGGTAC 957
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1016 TGTTACTTCAATACTGGTGTAATGGTGATTGATTTGAAGAAGTGGAGACAATTTAGGTTC 1075
Query 958 ACGAAACGCATTGAGAAATGGATGGAGATTCAGAAGATGGAGAGGATTTATGAGCTGGGT 1017
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1076 ACGAAACGAATTGAGAAATGGATGGAGATTCAGAAGATAGAGAGGATTTATGAGCTTGGT 1135
Query 1018 TCTCTTCCTCCGTTTCTTCTGGTATTTGCTGGTCATGTAGCTCCGATTTCGCATCGGTGG 1077
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1136 TCTCTTCCTCCGTTTCTTCTGGTATTTGCTGGTCATGTAGCTCCGATTTCACATCGGTGG 1195
Query 1078 AATCAACATGGACTTGGTGGTGATAATGTTAGAGGTAGCTGCCGTGATTTGCATTCTGGT 1137
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1196 AATCAACATGGGCTTGGTGGTGATAATGTTAGAGGTAGTTGCCGTGATTTGCATTCTGGT 1255
Query 1138 CCTGTGAGTTTGCTTCATTGGTCAGGTAGTGGTAAGCCATGGTTAAGACTTGATTCCAAG 1197
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1256 CCTGTGAGTTTGCTTCACTGGTCAGGTAGTGGTAAGCCATGGTTAAGACTCGATTCCAAG 1315
Query 1198 CTTCCATGTCCTTTAGACACATTGTGGGCACCTTATGATTTGTATAAACACTCCCATTGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CTTCCATGTCCTTTAGACACATTGTGGGCACCTTATGATTTGTATAAACACTCCCATTGA 1375
Query 1258 CACCGGTTTCTGAGTTCGACATATTCATCGCCATGAGGACTAAACCGAAGATAG 1311
|| |||| ||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 1376 TGCCAATTTC-GAGTTCGACATATTCATGGTCATGGGGACTAAACCGAAGATAG 1428
> AT4G02130.1 | Symbols: GATL6, LGT10 | galacturonosyltransferase
6 | chr4:944367-947085 REVERSE LENGTH=1693
Length=1693
Score = 697 bits (377), Expect = 0.0
Identities = 720/884 (81%), Gaps = 30/884 (3%)
Strand=Plus/Plus
Query 390 CGGCGTCTGTAA-CCCTAATCTCGTCCACGTAGCCATCACACTCGACATCGATTACCTCC 448
||||||||| || || | | | |||||||| || ||||| | ||| | || ||||| |
Sbjct 455 CGGCGTCTGCAATCCGTCGT-TGGTCCACGTGGCGATCACGTTAGACGTAGAGTACCTGC 513
Query 449 GTGGCTCAATCGCAGCCGTGAATTCAATCCTCCAGCACTCAATGTGTCCTCAAAGCGTCT 508
||||||||||||||||||| || || ||||| |||||||| ||||||| | |||||||
Sbjct 514 GTGGCTCAATCGCAGCCGTTAACTCGATCCTTCAGCACTCGGTGTGTCCAGAGAGCGTCT 573
Query 509 TCTTCCACTTCCTCGTC-TCCTCCGA-GATTCAAAACC---TAGAATCTCTGATTCGTTC 563
||||||||||| ||| | | |||||| || | ||||| | || || ||| | | ||
Sbjct 574 TCTTCCACTTCATCGCCGT-CTCCGAGGAAAC-AAACCTGTTGGAGTCGCTGGTGAGATC 631
Query 564 AACTTTCCCCAAATTGACGAATCTCAAAATTTACTATTTTGCCCCTGAGACCGTACAGT- 622
|||||| | | ||| ||| |||| |||||| |||||||||||||||| || | ||
Sbjct 632 GGTTTTCCCGAGACTGA--AAT-TCAATATTTACGATTTTGCCCCTGAGACAGTTC-GTG 687
Query 623 CTTTGATTTCATCTTCCGTGAGACAAGCCCTAGAGCAACCGT-TGAATTACGCCAGAAAT 681
||||||||| ||||||||||||||||| || ||||| || | |||| ||||| ||||
Sbjct 688 GTTTGATTTCTTCTTCCGTGAGACAAGCTCTCGAGCAGCC-TCTGAACTACGCTAGAAGC 746
Query 682 TACTTGGCGGATCTGCTCGAGCCTTGCGTTAAGCGAGTCATCTACTTGGATTCGGATCTC 741
||||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||||
Sbjct 747 TACTTAGCGGATCTGCTGGAGCCTTGTGTTAACCGTGTCATATACTTGGATTCGGATCTT 806
Query 742 GTCGTCGTTGATGATATCGTC-AAGCTTTGGAAAACGGGTTTAGGC-CAGAGAACAATCG 799
|||||||| ||||| |||| | |||||||||||||| | ||||| | ||| | |||||
Sbjct 807 GTCGTCGTCGATGACATCG-CTAAGCTTTGGAAAACTAGCCTAGGCTC-GAGGATAATCG 864
Query 800 GAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATACTTCACCGGAGGTTTTTGGTCAG 859
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 865 GAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATACTTCACCGGAGGATTCTGGTCGG 924
Query 860 ATAAGAGGTT-TAACGGGACGTTCAAAGGGAGAAACCCTTGTTACTTCAATACTGGTGTA 918
| |||| || | ||| || || | |||||| || || ||||||||||| || |||||
Sbjct 925 AGGAGAGATTCTC-CGGTACCTTTAGAGGGAGGAAGCCATGTTACTTCAACACAGGTGTG 983
Query 919 ATGGTGATTGAT-TTGAAGAAGTGGAGACGATTTAGGT-ACACGAAACGCATTGAGAAAT 976
|||||||| ||| || ||||| |||||| || | ||| |||||||||| || |||||||
Sbjct 984 ATGGTGATAGATCTT-AAGAAATGGAGAAGAGGT-GGTTACACGAAACGTATCGAGAAAT 1041
Query 977 GGATGGAGATTCAGAAGATG-GAGAGGATTTATGAGCTGGGTTCTCTTCCTCCGTTTCTT 1035
||||||||||||||| || | ||||||||||| || || || || ||||| |||||||||
Sbjct 1042 GGATGGAGATTCAGA-GAAGAGAGAGGATTTACGAACTAGGCTCGCTTCCACCGTTTCTT 1100
Query 1036 CTGGTATT-TGCTGGTCATGTAGCTCCGATTTCGCATCGGTGGAATCAACATGGACTTGG 1094
|| || || | | ||||| || ||||| || || || |||||||| || |||||||||||
Sbjct 1101 CTAGTTTTCTCC-GGTCACGTGGCTCCCATCTCTCACCGGTGGAACCAGCATGGACTTGG 1159
Query 1095 TGGTGATAATGTTAGAGGTAGCTGCCGTGATTTGCATTCTGGTCCTGTGAGTTTGCTTCA 1154
|||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 1160 TGGTGACAATGTTAGAGGTAGCTGTCGTGATTTGCATCCTGGTCCTGTGAGTTTGCTGCA 1219
Query 1155 TTGGTCAGGTAGTGGTAAGCCATGGTTAAGACTTGATTCCAAGCTTCCATGTCCTTTAGA 1214
|||||| |||||||| ||||| ||| ||||||| |||||||| | || ||||| |||||
Sbjct 1220 TTGGTCTGGTAGTGGCAAGCCCTGGATAAGACTCGATTCCAAACGGCCTTGTCCCTTAGA 1279
Query 1215 CACATTGTGGGCACCTTATGATTTGTATAAACACTCCCATTGAC 1258
| |||| ||| | ||||| || |||||| ||| || |||||||
Sbjct 1280 CGCATTATGGACGCCTTACGACTTGTATCGACATTCGCATTGAC 1323
> AT1G24170.1 | Symbols: GATL8, LGT9 | Nucleotide-diphospho-sugar
transferases superfamily protein | chr1:8557216-8558832 REVERSE
LENGTH=1617
Length=1617
Score = 134 bits (72), Expect = 3e-30
Identities = 380/521 (73%), Gaps = 51/521 (10%)
Strand=Plus/Plus
Query 751 GATGATATCGTC-AAGCTTTGGAAAACGGGTTT-A---GGCCA-GAGAACAATCGGAGCT 804
||||||||| | ||||||||||| |||| ||| | || || ||| | |||||||||
Sbjct 801 GATGATATC-ACAAAGCTTTGGAACACGGTTTTGACCGGGTCACGAG-TC-ATCGGAGCT 857
Query 805 CCGGAGTATTGTCACGCGAATTTCACGAAATACTTCAC--CGGAGGTTTTTGGTCAGATA 862
|||||||||||||||||||| ||||| | || ||||| | | |||| | |||||||
Sbjct 858 CCGGAGTATTGTCACGCGAACTTCACTCAGTATTTCACTTCCG-GGTTCT-GGTCAGACC 915
Query 863 AGAGGTTTAACGGGACGT--TCAAAGGGAGAAAC-CCTTGTTACTTCAATACTGGTGTAA 919
| | |||| |||| | | || ||| ||| ||||| || ||||| || || || |
Sbjct 916 CG-GCTTTACCGGGTC-TAATCTC-GGGTCAAAAGCCTTGCTATTTCAACACAGGAGTGA 972
Query 920 TGGTGATTGAT-TTGA-AGAAGTGGAGACGATTT-AGGTACACGAAACGCA-TT-GAGAA 974
||||||| ||| ||| ||| |||||| || | |||| || | | | || ||| |
Sbjct 973 TGGTGATGGATCTTGTTAGA--TGGAGA-GAAGGGAATTACA-GAGA-GAAGTTAGAGCA 1027
Query 975 ATGGATGGAGATT-CAGAAGATGGA-GAGGATTTATGAGCTGGGTTCTCTT-CCTCCGTT 1031
||||||| | ||| ||||||| | | ||| || || || || || || || || |||||
Sbjct 1028 ATGGATGCA-ATTGCAGAAGAAG-ATGAGAATCTACGATCTTGGATCA-TTACCACCGTT 1084
Query 1032 TCTTCTGGTATTTGCTGGTCATGTAGCTCCGATTTCGCATCGGTGGAATCAACATGGACT 1091
|||| |||| ||||| ||| |||| | | ||| ||| | ||||| |||||||| |
Sbjct 1085 TCTTTTGGTGTTTGCGGGTAATGTTGAAGCTATTGATCATAGATGGAACCAACATGGT-T 1143
Query 1092 T-GGTGGTGATAATGTTA-GAGGTAGCTGCCG-TGATTTGCATTCTGGTCCTGTGAGTTT 1148
| || || || ||| | | |||| || || || | ||| |||| ||||||||||||| ||
Sbjct 1144 TAGGAGGAGACAATAT-ACGAGGAAGTTGTCGGTCATT-GCATCCTGGTCCTGTGAGCTT 1201
Query 1149 GCTT-CATTGGTCAGGTAGTGGTAAGCCATGG-TTAAGACTTGATTCCAAGCTTCCATGT 1206
| || |||||| |||| |||||||||||| ||| |||||||| ||| || |||
Sbjct 1202 G-TTGCATTGGAGTGGTAAAGGTAAGCCATGGGTTA-GACTTGATGAGAAGAGGCCTTGT 1259
Query 1207 CCTTTAGA-CA-CATTGTGGGCA-CCTTATGATTTGTATAA 1244
|| || || || | || |||| | || ||||||||||||||
Sbjct 1260 CCGTTGGATCATC-TT-TGGG-AGCCATATGATTTGTATAA 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5