BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470233 Length=1112 Score E Sequences producing significant alignments: (Bits) Value AT1G02740.1 | Symbols: | MRG family protein | chr1:599416-6020... 1694 0.0 > AT1G02740.1 | Symbols: | MRG family protein | chr1:599416-602038 REVERSE LENGTH=1319 Length=1319 Score = 1694 bits (917), Expect = 0.0 Identities = 1022/1072 (95%), Gaps = 10/1072 (1%) Strand=Plus/Plus Query 1 TTTTTGAGATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTTACAACCGTTGATTTCA 60 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 10 TTTTTGAGATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTAACAACCGATGATTTCA 69 Query 61 TCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 TCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAG 129 Query 121 AAGACTTGCCTCTTCTTCTTCTACCTGCTCCTCCCGGTCACTTCGAAGAAGGAGAGAGAG 180 |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 130 AAGATTTGCCTCTTCTTCTGCTACCTGCTCCTCCCGGCCACTTCGAAGAAGGAGAGAGAG 189 Query 181 TTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 TTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAG 249 Query 241 ACAATGAATGGAAGTATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGG 300 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 ACAATGAATGGAAATATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGA 309 Query 301 TAAGTCTGGACTGTCTGTTGAAACATTCAGAGGAGAATATTGAGAAACAGAAGGAACAGG 360 |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 310 TAAGGCTGGACTGTCTGTTGAAACATTCAGATGAGAATATTGAGAAACAGAAAGAACAGG 369 Query 361 GTTTGAAGCAGCAAGGAATTAAGAGTGCTATGGCTTGGAGAGTATCAAAGATGAAACCTA 420 ||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||||| Sbjct 370 GTTTGAAACAGCAAGGGATTAAGAGTGCTATGGCTTGGAAAGTGTCAAAGATGAAACCTA 429 Query 421 GAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 430 GAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGA 489 Query 481 ATGTGGTTCCCTCTGACAATCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAAC 540 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 490 ATGTGCTTCCCTCTGACAACCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAAC 549 Query 541 TAATTGACGATTATGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTC 600 | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 TTCTTGACGATTTTGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTC 609 Query 601 CAAATGTGGATGACATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAGCATAGCAGGG 660 |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 610 CAAATGTGGATGGCATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAACATGGCAGGG 669 Query 661 TAACTGATTCATTAGAGGAAATTCTCAAAGGTTTGCGTTGTTACTTTGACAAAGCTTTAC 720 |||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| Sbjct 670 TAACAGATTCATTAGAGGAAATTCTGAAAGGCTTGCGTTGCTACTTTGACAAAGCTTTAC 729 Query 721 CGGTGATGTTGCTTTACAACAATGAACGGAAGCAATACGAGGAATCCGTATCAGCGGATG 780 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || Sbjct 730 CGGTGATGTTGCTTTACAACAATGAACGGAAGCAGTACGAGGAATCCGTATCAGGGGGTG 789 Query 781 TTTCTCCCTCAACTGTGTATGGAGCAGAGCATTTGTTACGACTCTTTGTGAAATTGCCGG 840 ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 790 TTTCTCCTTCAACTGTGTACGGAGCAGAGCATTTGTTGCGACTCTTTGTGAAATTACCGG 849 Query 841 AGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTG 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 850 AGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTG 909 Query 901 TTGATATTCTTAGGTTCTTGAGGAAGAATCAGAGTGTGTTTTTTGTATCGGCATACAAAG 960 |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 910 TTGATATTCTCAGGTTCTTGAGGAAGAATCAGAGTGTGCTTTTTGTATCGACATACAAAG 969 Query 961 CAGTGGAAGAAATGGAGAAGAAAGAAGATTAGG---T-GTGCCGAATGACGTGT------ 1010 ||||||||||||||||||||||||||| ||||| | ||||| |||||||||| Sbjct 970 CAGTGGAAGAAATGGAGAAGAAAGAAGGTTAGGAAATTGTGCCTAATGACGTGTTCTTGT 1029 Query 1011 AAGTATGTGCAGCGAATCTTCTGTTTGTAGTATTATGTAACGAGACCTAAGA 1062 |||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1030 AAGTATGTGCAGCGAATCTTCTCTTTGTAGTATTTTGTAACGAGACCTAAGA 1081 Score = 76.8 bits (41), Expect = 4e-13 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 1063 GTTCGGTCTCGATTTTCAAAGCACTTAAACGTCGTTATCGTGTTTGTCTC 1112 |||| ||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 1270 GTTCCGTCTCGATTTTGAAAGTACTTAAACGTCGTTATCGTGTTTGTCTC 1319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54517791870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5