BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470233
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02740.1 | Symbols: | MRG family protein | chr1:599416-6020... 1694 0.0
> AT1G02740.1 | Symbols: | MRG family protein | chr1:599416-602038
REVERSE LENGTH=1319
Length=1319
Score = 1694 bits (917), Expect = 0.0
Identities = 1022/1072 (95%), Gaps = 10/1072 (1%)
Strand=Plus/Plus
Query 1 TTTTTGAGATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTTACAACCGTTGATTTCA 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 10 TTTTTGAGATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTAACAACCGATGATTTCA 69
Query 61 TCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAG 129
Query 121 AAGACTTGCCTCTTCTTCTTCTACCTGCTCCTCCCGGTCACTTCGAAGAAGGAGAGAGAG 180
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 130 AAGATTTGCCTCTTCTTCTGCTACCTGCTCCTCCCGGCCACTTCGAAGAAGGAGAGAGAG 189
Query 181 TTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAG 249
Query 241 ACAATGAATGGAAGTATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGG 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ACAATGAATGGAAATATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGA 309
Query 301 TAAGTCTGGACTGTCTGTTGAAACATTCAGAGGAGAATATTGAGAAACAGAAGGAACAGG 360
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 310 TAAGGCTGGACTGTCTGTTGAAACATTCAGATGAGAATATTGAGAAACAGAAAGAACAGG 369
Query 361 GTTTGAAGCAGCAAGGAATTAAGAGTGCTATGGCTTGGAGAGTATCAAAGATGAAACCTA 420
||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 370 GTTTGAAACAGCAAGGGATTAAGAGTGCTATGGCTTGGAAAGTGTCAAAGATGAAACCTA 429
Query 421 GAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGA 489
Query 481 ATGTGGTTCCCTCTGACAATCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAAC 540
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ATGTGCTTCCCTCTGACAACCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAAC 549
Query 541 TAATTGACGATTATGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTC 600
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTCTTGACGATTTTGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTC 609
Query 601 CAAATGTGGATGACATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAGCATAGCAGGG 660
|||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 610 CAAATGTGGATGGCATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAACATGGCAGGG 669
Query 661 TAACTGATTCATTAGAGGAAATTCTCAAAGGTTTGCGTTGTTACTTTGACAAAGCTTTAC 720
|||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 670 TAACAGATTCATTAGAGGAAATTCTGAAAGGCTTGCGTTGCTACTTTGACAAAGCTTTAC 729
Query 721 CGGTGATGTTGCTTTACAACAATGAACGGAAGCAATACGAGGAATCCGTATCAGCGGATG 780
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 730 CGGTGATGTTGCTTTACAACAATGAACGGAAGCAGTACGAGGAATCCGTATCAGGGGGTG 789
Query 781 TTTCTCCCTCAACTGTGTATGGAGCAGAGCATTTGTTACGACTCTTTGTGAAATTGCCGG 840
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 790 TTTCTCCTTCAACTGTGTACGGAGCAGAGCATTTGTTGCGACTCTTTGTGAAATTACCGG 849
Query 841 AGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTG 909
Query 901 TTGATATTCTTAGGTTCTTGAGGAAGAATCAGAGTGTGTTTTTTGTATCGGCATACAAAG 960
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 910 TTGATATTCTCAGGTTCTTGAGGAAGAATCAGAGTGTGCTTTTTGTATCGACATACAAAG 969
Query 961 CAGTGGAAGAAATGGAGAAGAAAGAAGATTAGG---T-GTGCCGAATGACGTGT------ 1010
||||||||||||||||||||||||||| ||||| | ||||| ||||||||||
Sbjct 970 CAGTGGAAGAAATGGAGAAGAAAGAAGGTTAGGAAATTGTGCCTAATGACGTGTTCTTGT 1029
Query 1011 AAGTATGTGCAGCGAATCTTCTGTTTGTAGTATTATGTAACGAGACCTAAGA 1062
|||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1030 AAGTATGTGCAGCGAATCTTCTCTTTGTAGTATTTTGTAACGAGACCTAAGA 1081
Score = 76.8 bits (41), Expect = 4e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1063 GTTCGGTCTCGATTTTCAAAGCACTTAAACGTCGTTATCGTGTTTGTCTC 1112
|||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1270 GTTCCGTCTCGATTTTGAAAGTACTTAAACGTCGTTATCGTGTTTGTCTC 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5