BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470234
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02750.1 | Symbols: | Drought-responsive family protein | c... 1179 0.0
> AT1G02750.1 | Symbols: | Drought-responsive family protein |
chr1:602497-604292 FORWARD LENGTH=1000
Length=1000
Score = 1179 bits (638), Expect = 0.0
Identities = 858/955 (90%), Gaps = 52/955 (5%)
Strand=Plus/Plus
Query 1 GTAGTTTCTTGACA---T-TTTCTG-TATCTCACACACAATTGGGTATTTAGCTGACACG 55
|||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||
Sbjct 55 GTAGTTTCTTGACATTTTCTTTCTGCTATCTCTTACACAATTGGGTATTTAGCTGACACG 114
Query 56 ACGAAGGAGG----TC-TCAATTATCTGAGATTTTTATAAAAGCTCCGATTCGTGGAGAT 110
|||||| ||| || |||||||||||||||||||| | ||| | | | ||
Sbjct 115 ACGAAGAAGGTCTCTCATCAATTATCTGAGATTTTTACATAAG---AAAGGC-T-CCGA- 168
Query 111 TCATAAATCAGATGGAAGACGATATGTGGTGCGTTAGCTCATCTGGTTCTTCAAGAAGCT 170
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 169 -C--AAAGCAGATGGAAGACGATATGTGGTGCGTTAGCTCATCTGGTTCTTCTAGAAGCT 225
Query 171 ATCGATCAGAAACTGCTGCTAAGTATCAATCAGGGCCTTATCTAGATTTGGAAGAGTTTG 230
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 226 ATCGATCGGAAACTGCTGCTAAGTATCAATCAGGGCCTTATCAAGATTTGGAAGAGTTTG 285
Query 231 AAGAAGTT---GACGATATAGCAGTGGAGTA-CCAATGCCCGTTTTGCGCGAGTGATTAT 286
|||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 286 AAGAAGTTGACGACGATATAGCAGTGGAGTATCC-ATGCCCGTTTTGCGCAAGTGATTAT 344
Query 287 GATTTAATTGAATTGTGTCACCATATCGACGAAGAACATCATCTTGAAGCTAACAATGGG 346
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 345 GATTTAGTTGAATTGTGTCACCATATCGACGAAGAACATCGTCATGAAGCTAACAATGGG 404
Query 347 ATATGTCCTGTTTGTAGCAAAAGGGTGAAGATGCATATGGTGGATCATATAACATCACAT 406
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 ATATGTCCTGTATGTAGCAAAAGGGTGAAGATGCATATGGTGGATCATATAACATCACAT 464
Query 407 CAT----A------G-AGA-T------AAGGAAATGTCGTACAGGGAAGATCCATATTCA 448
||| | | ||| | ||||||||||| ||||||||||||||||||| |
Sbjct 465 CATAGAGATGTCTTGAAGAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTA 524
Query 449 TCTGATAAATATTTTCAACCTCCTCTTGATGAGTCGCCACCATCTATGACTCATCATCAT 508
|||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 525 TCTGATAAATATCTTCAACCTCATCTTGATGAGTTGCCACCATCTATGAATCATCATCAG 584
Query 509 CGTACCTCTAATTTTGTTGTTTCCGATCAATTTTTATCATTCATCGACAATTCTGCGTTA 568
| | ||||||| ||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 585 CATCCCTCTAA---ACATGTTTCCGATCAATTTTTATCGTTCATCAACAATTCTGCATTA 641
Query 569 CCAAATCAGACCAAGCTTGTGCAGCCTGATTCAAGTGTAGAAAACAAGAATCTGATTAAG 628
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct 642 CCAAATCAGACCAAGCTTGTGCTGCCTGATTCAAGTGTAGAAGACAAGAATCCGATTAAG 701
Query 629 GATTCGTCAACAGCAAAAGAAGGG-ACATCGTCGTCTCCTTTATCGGATAGTGATAAATT 687
||||||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 702 GATTCGTCAGCAGCAAAAG-AGGGTACATCGTCGTGTCCTTTATCGGATAGTGATAAATT 760
Query 688 GGAGAAGGCAAAGAAGTGTGAGTTTGTACAGGGACTATTGTCATCAGCCATGTTTGGTGA 747
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 761 GGAGAAGGCAAAGAAGTGTGAGTTTGTACAGGGACTGTTGTCATCAGCCATGTTTGATGA 820
Query 748 TGAATGCGACTTCTTCTGAGTAAAATAAAGATGTGAAGTCGCCAATGGGGAAGGGCAGGT 807
|||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 821 TGAATGTGACT-CTTCTGAGTAAAATAAAGATGTGAAGTCGCCAATGGGAAAGG-CAGGT 878
Query 808 GATTGTCATTGTTGTAATTT-ATTCAGCTCTATTTATATAT--GCATCTTTTTTACAGAC 864
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 879 GATTGTCATTGTTGTAATTTTATTCAGCTCTATTTATATATATGCATCTTTTTTACAGAC 938
Query 865 ATAACACTAGCTTTAGTCTTATAATATAAGCTGATGAGTTTTCAGTTTGTTTCTT 919
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 939 ATAACACTAGCTTTAGCCTTATAATATAAGCTGATGAGTTTTCAGTTTGTTTCTT 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5