BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470235
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family ... 1626 0.0
AT4G02230.1 | Symbols: | Ribosomal protein L19e family protein... 582 2e-165
AT3G16780.1 | Symbols: | Ribosomal protein L19e family protein... 466 2e-130
> AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family
protein | chr1:607808-609465 REVERSE LENGTH=1031
Length=1031
Score = 1626 bits (880), Expect = 0.0
Identities = 939/967 (97%), Gaps = 6/967 (1%)
Strand=Plus/Plus
Query 1 ATATAAATTCTTTTCGTCTGGTTCGCTAGTCAGTTCTCCGCCACACCAATCTCCAGAAAA 60
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATATAAATTCTTTTCGTCTCGTTCGCTAATCAGTTCTCCGCCACACCAATCTCCAGAAAA 60
Query 61 GGGGAGAAGCAAAAATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTCATGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GGGGAGAAGCAAAAATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGATGA 120
Query 121 AGTGCGGGAAGGGCAAAGTTTGGCTCGATCCCAATGAAAGCTCCGACATCTCCATGGCCA 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGTGCGGGAAGGGCAAAGTTTGGCTCGATCCCAACGAAAGCTCCGACATCTCCATGGCCA 180
Query 181 ATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCA 240
Query 241 AGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTCGTCACT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTCGTCACT 300
Query 301 CTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGA 360
Query 361 TGCGCAGGATGCGTGTTCTGAGGCGTCTGTTGAAGAAATACCGAGAGTCGAAGAAGATTG 420
|||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 361 TGCGTAGGATGCGTGTTCTTAGGCGTCTGTTGAAGAAATACAGAGAGACGAAGAAGATTG 420
Query 421 ACAAGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAAGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGC 480
Query 481 GTGTCTTGATGGAGAGTATCCACAAGTCTAAGGCTGAGAAGGCTAGAGAGAAGACTTTGT 540
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 481 GTGTCTTGATGGAGAGTATCCACAAGTCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGT 540
Query 541 CTGATCAGTTTGAGGCTAAGAGGGCAAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTA 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CTGATCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTA 600
Query 601 GGAGAGAGGAGCGTTTAGCTAAGGGTCCCGGTGGAGATGCTGCGCCTGTAGCTGCACCAG 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 601 GGAGAGAGGAGCGTTTAGCTAAGGGTCCCGGTGGAGATGTTGCGCCTGTAGCTGCTCCAG 660
Query 661 CACCTGCTGCTACACCTGCTCAAACTGCAGATGTACCGAAGAAGAAGTCTAAGAAGTGAA 720
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 661 CACCTGCTGCTACACCTGCTCCAACTGCAGCTGTACCGAAGAAGAAGTCTAAGAAGTGAA 720
Query 721 GAGAGGATATATAGTGACAAGCTATATCGATCATCAGTTCACGGATTAGACTCTGAAGAA 780
||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAG-G-ATATATAGTGTGAAGCTATATCGATCATCAGTTCACGGATTAGACTCTGAAGAA 778
Query 781 GGTTTTGAATGTTTTATCGAATGCGTTTGTGGAATAACTTTTATTTTCGCAA-GAACATA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 GGTTTTGAATGTTTTATCGAATGCGTTTGTGGAATAACTTTTATTTTCGCAAAGAACATA 838
Query 840 ACTTATGTCAGTTAATCTTTATGCTTTCAGATTTTTAGTTTACAGTGTTTCAACAGACCT 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 839 ACTTATGTCAGTTAATCTTTATGCTTTCAGATTTTTAGCTTACAGTGTTTCAACAGACCT 898
Query 900 ACTTTGCAAGAAGTTGTTCtttttttGGTTTCTTATTGTTTTTCGTTCATCATACACAAT 959
|||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 899 ACTTTGCAAG---TTGTTCTTTTTTTGGTTTCTTATTGTTTTTCGTTCGTCATACGCAAT 955
Query 960 TAAAAAA 966
|| ||||
Sbjct 956 TACAAAA 962
> AT4G02230.1 | Symbols: | Ribosomal protein L19e family protein
| chr4:979170-980670 REVERSE LENGTH=878
Length=878
Score = 582 bits (315), Expect = 2e-165
Identities = 497/584 (85%), Gaps = 16/584 (3%)
Strand=Plus/Plus
Query 62 GGGAGAAGCAAAAATGGTTTC-TCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTCA-TG 119
|||||| || ||||||||||| | |||||||||||||||| ||||| | ||||| | |
Sbjct 18 GGGAGAGGCTAAAATGGTTTCGT-TGAAGCTCCAGAAGCGTCTCGCATCCTCAGT-ACTC 75
Query 120 AAGTGCGGGAAGGGCAAAGTTTGGCTCGATCCC-AATGAAAGCTCCGACATCTCCATGGC 178
|||||||||||| | ||||| |||||||| ||| || ||| | || |||||||||||
Sbjct 76 AAGTGCGGGAAGAGAAAAGTATGGCTCGA-CCCGAACGAAGGAAGTGATATCTCCATGGC 134
Query 179 CAATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAAC 238
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 135 CAATTCGCGTCAAAACATCAGGAAGCTTGTGAAGGATGGATTCATCATCAGGAAGCCAAC 194
Query 239 CAAGATTCACTCTCGTTCCAGAGCTCG-CAAAATGAAGATTGCCAAGATGAA-GGGTCGT 296
||||| ||||| || ||||| || || ||| |||| || ||||||| ||| ||| |||
Sbjct 195 GAAGATCCACTCACGATCCAGGGCACGTCAAT-TGAATATAGCCAAGA-GAAAGGGACGT 252
Query 297 CACTCTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTG 356
|||||||| || |||||||||||||||||||| || || |||||||||||||| || ||
Sbjct 253 CACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGTTGCCAACAAAAGTTTTG 312
Query 357 TGGATGCGCAGGATGCGTGTTCTGAGGCGTCTGTTGAAGAAATACCGAGAGTCGAAGAAG 416
|||||| | |||||| | || |||||||||||||||||||| || | ||| | ||||||
Sbjct 313 TGGATGAGGAGGATGAGAGTGCTGAGGCGTCTGTTGAAGAAGTATAGGGAGACCAAGAAG 372
Query 417 ATTGACA-AGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAA 475
||||||| | || ||||||||||||||||||||| || ||||| || || ||||||||
Sbjct 373 ATTGACAGA-CATATGTACCATGACATGTACATGAAAGTCAAGGGAAACGTCTTCAAGAA 431
Query 476 CAAGCGTGTCTTGATGGAGAGTATCCACAAGTCTAAGGCTGAGAAGGCTAGAGAGAAGAC 535
||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||||
Sbjct 432 CAAGCGTGTGTTGATGGAAAGTATTCACAAATCCAAGGCTGAGAAGGCTAGAGAGAAGAC 491
Query 536 TTTGTCTGATCAGTTTGAGGCTAAGAGGGCAAAGAACAAGGCTAGCCGAGAAAGGAAGCA 595
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 492 ATTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGAGAGAGGAAACA 551
Query 596 TGCTAGGA-GAGAGGAGCGT-TTAGCTAAGGGTCCCGGTGGAGA 637
|||| | | ||||||||||| || || |||||||| || |||||
Sbjct 552 TGCTCG-ACGAGAGGAGCGTCTT-GCCAAGGGTCCTGGAGGAGA 593
> AT3G16780.1 | Symbols: | Ribosomal protein L19e family protein
| chr3:5708925-5710579 FORWARD LENGTH=1017
Length=1017
Score = 466 bits (252), Expect = 2e-130
Identities = 461/561 (82%), Gaps = 18/561 (3%)
Strand=Plus/Plus
Query 74 AATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTCATGAAGTGCGGGAAGGG 133
|||||| || |||||| |||||||||||||||||||||| || ||||| |||||||| ||
Sbjct 57 AATGGTGTCGCTGAAGATCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAGG 116
Query 134 CAAAGTTTGGCTCGATCCCAATGAAAGC-TCCGACATCTCCATGGCCAATTCCCGCCAAA 192
|||||||||||||| ||||||| || | ||| ||||| |||||||||||| | || |
Sbjct 117 AAAAGTTTGGCTCGACCCCAATG-AATCGGGCGATATCTCTATGGCCAATTCCAGGCAGA 175
Query 193 ACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCAAGATTCACTCTC 252
|||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||| |
Sbjct 176 ACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACTAAGATCCACTCAC 235
Query 253 GTTC-CAGAGCTCGCAAAATGAA-GATTGCCAAGATG-AAGGGTCGTCACTCTGGATACG 309
|||| | | ||| | |||| || |||||| | ||||||||||||||||||||||
Sbjct 236 GTTCTC-GGGCTAGGGCTTTGAACGA-GGCCAAG-CGAAAGGGTCGTCACTCTGGATACG 292
Query 310 GTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGCAGGA 369
||||||| |||||||| | || || ||| | ||||| ||| | || |||||| | || |
Sbjct 293 GTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAA 352
Query 370 TGCGTGT-TCTGAGGCGTCTGTTGAAGAAA-TACCGAGAGTCGAAGAAGATTGACAAGCA 427
|| | || | |||||||| | |||| | || ||||| ||||| ||||||||||| | |||
Sbjct 353 TGAGGGTGT-TGAGGCGTTTCTTGA-GCAAGTACCGTGAGTCAAAGAAGATTGATAGGCA 410
Query 428 CATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGT-CT 486
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 411 CATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCT 470
Query 487 TGATGGAGAGTATCCACAAG-TCTAAGGCTGAGAAGGCTAGAGAGAAGACTTT-GTCTGA 544
| |||||||| ||||||||| | ||||||||||||||||||||||||||| | | ||||
Sbjct 471 T-ATGGAGAGCATCCACAAGATG-AAGGCTGAGAAGGCTAGAGAGAAGACTCTCG-CTGA 527
Query 545 TCAGTTTGAGGCTAAGAGGGCAAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAG 604
||||||||||| ||| | ||||||||||||||| | || || ||| ||| || ||
Sbjct 528 CCAGTTTGAGGCCAAGCGTATTAAGAACAAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAG 587
Query 605 AGAGGAGCGTTTAGCTAAGGG 625
||||||| | |||||| ||||
Sbjct 588 AGAGGAGAGATTAGCTCAGGG 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5