BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470239
Length=518
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02813.1 | Symbols: | Protein of unknown function, DUF538 |... 780 0.0
> AT1G02813.1 | Symbols: | Protein of unknown function, DUF538
| chr1:620678-621289 FORWARD LENGTH=612
Length=612
Score = 780 bits (422), Expect = 0.0
Identities = 491/523 (94%), Gaps = 10/523 (2%)
Strand=Plus/Plus
Query 1 AATGTCCATCTTCATGATCTTCTTCCTCCTTCTCTCTACTTCTTTATCCGTCTCCGGCCa 60
||||||||| ||||| |||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 95 AATGTCCATTTTCATCATCTTCCTCCTTCTTCTCTCTACTTCTGTATCCGTCTCCGGCCA 154
Query 61 aaaaaaGCCAAGTGTTTACCAGGTTCTCGAAAACTACACCTTACCACGAGGAATCTTACC 120
|||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 155 AAAAAAGCGAAGTGTCTACCAGGTTCTCGAAAACTACACCTTACCACGAGGAATATTACC 214
Query 121 AGAAGGTGTGCACGACTACGAGCTAAACCGAAGAACTGGCGTTTTCAAAGTCCGTTTCAA 180
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 215 AGAAGGTGTCCACGACTACGACCTAAACCGAAGAACTGGCGTTTTCAAAGTCCGTTTCAA 274
Query 181 CACCACGTGTTC-GTTCTCCATCGAGTCGTACAAGGTCAAATACAAACCCACAATCTCCG 239
||||||||| || ||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 275 CACCACGTG-TCAGTTCTCCATAGACTCGTACAAGGTCAAATACAAACCCGTAATCTCCG 333
Query 240 GCATCATAACAAGAGGACGGGTCATAAGGTTGATAGGCGTAAGCGTCAAAGTGCTTTTCT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 334 GCATCATAACAAGAGGACGGGTCATAAGGTTGATAGGCGTAAGCGTCAAAGTTCTTTTCT 393
Query 300 TTTGGATCAACATCTCCGAGGTGTCTCGTGACGGCGACGATGTCGAGTTCTTCGTTGGTG 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 394 TTTGGATCAACATCTCCGAGGTGTCTCGTGACGGCGACGACGTCGAGTTCTTCGTTGGTG 453
Query 360 CTGCCTCGGAGGAGTTCTCGACCAAGTATTTCGTGGACAGCCCAAAGTGTGGTTGTGGGT 419
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 454 CTGCTTCGGAGGAGTTCTCGAGCAAGTATTTCGTGGACAGCCCAAAGTGTGGTTGTGGGT 513
Query 420 TTAATTGTTATAGGCCTATCTCTTCCTTTTAAAGCCCATGGGCCTTAAA--T-TAAACCT 476
||||||||||||||||||||||||||| ||||||||||||||||||||| | | | |
Sbjct 514 TTAATTGTTATAGGCCTATCTCTTCCTCTTAAAGCCCATGGGCCTTAAAGCTGTTA---T 570
Query 477 G-TTATGAATAAATAAAATAAACACGGCCTTGAAGCTGTTATG 518
| |||| |||| |||||||||||||||||| ||||||||||||
Sbjct 571 GATTAT-AATATATAAAATAAACACGGCCTCGAAGCTGTTATG 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24765434471
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5