BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470241

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02830.1 | Symbols:  | Ribosomal L22e protein family | chr1:...   315    2e-85


> AT1G02830.1 | Symbols:  | Ribosomal L22e protein family | chr1:625145-625608 
REVERSE LENGTH=384
Length=384

 Score =  315 bits (170),  Expect = 2e-85
 Identities = 217/239 (91%), Gaps = 6/239 (3%)
 Strand=Plus/Plus

Query  1    ATGGCTCGAGGAATAGCGGCGAAGTCGAGT-G-G-TGGTGCTAAGAAGAAAGGAGTGTCG  57
            ||||||||| |  ||| ||| ||||||||| | | ||||||||||||||||||||| || 
Sbjct  1    ATGGCTCGA-G--TAGGGGCCAAGTCGAGTGGAGCTGGTGCTAAGAAGAAAGGAGTTTCT  57

Query  58   TTTGTGATCGACTGCTCTAAACCAGTTGATGATACGATCATGGAGATAGCCACGCTTGAG  117
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  58   TTTGTGATCGACTGCTCTAAACCAGTTGATGATACGATCTTGGAGATAGCCACGCTTGAG  117

Query  118  AAGTTTCTTCAGGAACGAATCAAGGTCGGAGGTAAAGCCGGTTCTCTTGGTAACTCCGTT  177
            ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| 
Sbjct  118  AAGTTTCTTCAGGAACGAATCAAGGTCAGAGGTAAAGCCGGTGCTCTTGGTAACTCCGTC  177

Query  178  TCCATTACCCGAGATAATGTAAAGATCACCGTCAACGCCGATTCCAACTTCTCTAAACG  236
            ||||| |||||| |||||| ||||||||  ||||||||| ||||||| ||||| |||||
Sbjct  178  TCCATCACCCGATATAATGGAAAGATCAATGTCAACGCCAATTCCAATTTCTCCAAACG  236


 Score =  139 bits (75),  Expect = 1e-32
 Identities = 83/87 (95%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  250  GTGATTGCATCTAACAAAGACAAAAATGTCTATGAGGTACGCTACTTCAGGATTGACGAT  309
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  298  GTGATTGCATCTAACAAAGACAAAAATGTCTACGAGGTACGCTACTTCAGGATTGACGAT  357

Query  310  GAAGTAGCTAGTGCCGAAGAAGATTAA  336
            ||||||||||||  ||| |||||||||
Sbjct  358  GAAGTAGCTAGTTACGAGGAAGATTAA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5