BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470251
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02860.1 | Symbols: NLA, BAH1 | SPX (SYG1/Pho81/XPR1) domain... 1932 0.0
> AT1G02860.1 | Symbols: NLA, BAH1 | SPX (SYG1/Pho81/XPR1) domain-containing
protein | chr1:635144-637262 FORWARD LENGTH=1517
Length=1517
Score = 1932 bits (1046), Expect = 0.0
Identities = 1267/1367 (93%), Gaps = 42/1367 (3%)
Strand=Plus/Plus
Query 1 ATAATAAAGCCAACACGAGACGCaagagagacagagaagaagaagagataagagagaaCC 60
||||| |||||||||||||||||||||||| ||| | | | |||||||||||| | | |
Sbjct 156 ATAATTAAGCCAACACGAGACGCAAGAGAG--AGATAGGGA-AAGAGATAAGAGCG-A-C 210
Query 61 TTTATTTGTTTTCTTGATCAAAATCC---TTTTTTGTTCGAGGGCTGAATTTGTTTGTTG 117
| |||||| ||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 211 ----TCTGTTTTGTTGATCAAAATCCTTTTTTTTTGTTTGAGGGCTGAATTTGTTTGTTG 266
Query 118 ATGGTCATCTAAGTTTATAA-----A----TTTTATTGA-----G----T------aaaa 153
|||||||||||| ||| ||| | ||||||||| | | ||||
Sbjct 267 ATGGTCATCTAAATTTGTAACCTTTATCTGTTTTATTGAGTTGTGAAATTCAGAGAAAAA 326
Query 154 a-aaaTGAAGTTTTGCAAGAAGTATGAAGAGTACATGCAAGGACAGAAGGAGAAGAGGAA 212
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 327 ATAAATGAAGTTTTGTAAGAAGTATGAAGAGTACATGCAAGGACAGAAGGAGAAGAAGAA 386
Query 213 TCTTCCTGGTGTTGGCTTTAAGAAGCTCAAGAAGATTCTCAAGAGATGCAGAAGAAATCA 272
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 387 TCTTCCTGGTGTTGGGTTTAAGAAACTCAAGAAGATTCTCAAGAGATGCAGGAGAAATCA 446
Query 273 TCTTCCTTCTAGAATGTCTTTTACTGAAACAATCAACCACAACTGTTCTCGTGAATGCCC 332
| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 447 TGTTCCTTCTAGAATTTCTTTTACTGATGCAATCAACCACAATTGTTCTCGTGAATGCCC 506
Query 333 AGTTTGTGATGGAACTTTTTTCCCGGAGCTTCTCAAGGAAATGGAAGATGTTGTTGGATG 392
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 AGTTTGTGATGGGACTTTTTTCCCGGAGCTTCTCAAGGAAATGGAAGATGTTGTTGGATG 566
Query 393 GTTTAACGAGAATGCTCAGAAGCTTCTTGAGCTGCATTTAGCTTCTGGTTTCACAAAGTG 452
|||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 567 GTTTAACGAGCATGCTCAGAAGCTTCTTGAGCTTCATTTAGCTTCTGGTTTTACAAAGTG 626
Query 453 TCTAACTTGGCTCAGAGGCAATAGTCGGAAAAAGGACCATCTTGGTTTGATCCAAGAGGG 512
||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct 627 TCTTACTTGGCTCAGAGGCAACAGTCGAAAAAAGGACCATCATGGTTTGATCCAAGAGGG 686
Query 513 CAAAGACTTGGTTAATTATGCTCTCATCAATGCCGTCGCCATTCGAAAAATCCTCAAGAA 572
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TAAAGATTTGGTTAATTACGCTCTCATCAATGCCGTCGCCATTCGAAAAATCCTCAAGAA 746
Query 573 ATATGACAAGATTCATGAGTCTAAGCAAGGACACGCGTTTAAGACTCAGGTCCAGAAAAT 632
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 747 ATATGACAAGATTCATGAGTCTAGGCAAGGACAAGCGTTTAAGACTCAGGTCCAGAAAAT 806
Query 633 GCGAATCGAAATCCTTCAGTCACCATGGCTCTGCGAGCTTATGGCGTTTCACATCAATCT 692
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 807 GCGAATAGAAATCCTTCAGTCACCGTGGCTCTGCGAGCTTATGGCGTTTCACATCAATCT 866
Query 693 GAAAGAATCTAAGAAGGAATCTGGAGCTACTGTGGC-T-T-CTCCTCCTCCTGTTCATGC 749
||||||||||||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct 867 GAAAGAATCTAAGAAGGAATCTGGAGCTACTATAACTTCTCCTCCTCCTCCTGTTCATGC 926
Query 750 ATTGTTCGATGGTTGCGCTTTGACTTTCGACGATGGGAAGCCTTTACTTTCCTGCGAGCT 809
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 ATTGTTTGATGGTTGCGCTTTGACTTTCGACGATGGGAAGCCTTTACTTTCCTGCGAGCT 986
Query 810 CTCTGATTCCGTCAAAGTTGACATTGACTTGACTTGTTCAATATGCCTGGACACGGTGTT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CTCTGATTCCGTCAAAGTTGACATTGACTTGACTTGTTCAATATGCCTGGACACGGTGTT 1046
Query 870 TGATCCGATATCTCTAACCTGCGGTCACATATATTGCTACATGTGTGCTTGCTCTGCTGC 929
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 TGATCCAATATCTCTAACCTGCGGTCACATATATTGCTACATGTGTGCTTGCTCTGCTGC 1106
Query 930 ATCAGTAAATGTAATTGATGGCTTGAAAACCGCAGAAGCAACTGAAAAATGCCCGCTTTG 989
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 ATCAGTAAACGTAGTTGATGGCTTGAAAACCGCAGAAGCAACTGAAAAATGCCCGCTTTG 1166
Query 990 CCGTGAGGATGGGGTTTATAAAGGTGCTGTTCACTTGGATGAGCTCCATATCTTACTCAA 1049
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1167 CCGTGAGGATGGGGTTTATAAAGGTGCTGTTCACTTGGATGAGCTCAATATTTTACTTAA 1226
Query 1050 GCGAAGCTGCAGAGACTATTGGGAAGAAAGGCGTAAAACAGAGAGAGCAGAAAGGTTACA 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 GCGAAGCTGCAGAGACTATTGGGAAGAAAGGCGTAAAACAGAGAGAGCAGAAAGGTTACA 1286
Query 1110 ACAAGCAAAGGAATATTGGGATTACCAATGCCGAAGCTTCACTGGAATATGATATAGCTT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1287 ACAAGCAAAGGAATATTGGGATTACCAATGCCGAAGCTTCACTGGAATATGATATAGTTT 1346
Query 1170 GATTTGTGGCTTCTCAAGTGAGATTCTTGATTTTGATAATAAGATAGTAAAGATAATCTT 1229
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1347 GATTTGTGGCTTCTTAAGTGAGATTCTTGATTTTGATAATAAGATAGTAAAAATAATCTT 1406
Query 1230 GATTTTGATTTGCTTTCCTCTGTGAGTGTGTTTTCTTGCACAGAGCGTGATGATTTGTTT 1289
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||
Sbjct 1407 AATTTTGATTTGCTTTCCTCTGTGAGTGTGTTTCCTTGCACAGAGAGTGACGATTTCTTT 1466
Query 1290 GTGATCA--CTGATAACTCTTAAGCATTCAATATGATTTATAAGTTT 1334
|||| | |||| |||||||||||||| |||||| |||||||||||
Sbjct 1467 GTGAAAAAACTGAAAACTCTTAAGCATTAAATATGGTTTATAAGTTT 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65662312860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5