BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470252
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02870.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1195 0.0
> AT1G02870.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome biogenesis protein Nop16
(InterPro:IPR019002); Has 104 Blast hits to 104 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink). | chr1:637214-638677 REVERSE LENGTH=843
Length=843
Score = 1195 bits (647), Expect = 0.0
Identities = 712/743 (96%), Gaps = 6/743 (1%)
Strand=Plus/Plus
Query 1 AAACCCTTTCCGCCGCGAACATCATCTTTCTGCTTTTTCTTCTACATCGC-aaaaaaaaa 59
|||||||||||||||||||| |||||| ||||||||||||||| |||||| |||| ||||
Sbjct 1 AAACCCTTTCCGCCGCGAACTTCATCTCTCTGCTTTTTCTTCTCCATCGCGAAAATAAAA 60
Query 60 aaTTCAGTGAGAGAGATGGCGAGGTCGAGAAGAAAGTATAGGAACTCTAGGGCTAAAGTT 119
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AA-TCAGTGAGAGAGATGGCGAGGTCGAGAAGAAAGTACAGGAACTCTAGGGCTAAAGTT 119
Query 120 CGCGTTGCTCTTCCTAAGAAGAACCCTAATATCTTTAAACCAGCTTTCAATTTCCCTCCC 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 CGCGTTGCTCTTCCTAAGAAGAACCCTAATATCTTTAAACCAGCTTTCAACTTCCCTCCC 179
Query 180 AAGCTCCGTGCTCTCATGGCCGACGATGTCCCTGAATGGGACGATCAAGCTAGCGTTATC 239
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGCTCCGCGCTCTCATGGGAGACGATGTCCCTGAATGGGACGATCAAGCTAGCGTTATC 239
Query 240 CAGAACTACAAATCCTTTGGCGTCCTCTCTAACCCTAATTTGCTTGGTATCCGATCTCGC 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 240 CAGAACTACAAATCCTTTGGCGTCATCTCTAACCCTAATTTGCTTGGTATCCGAGCTCGT 299
Query 300 ACTGACCATATGATTCAGGATGATTCCCTCAACGTTCCTCCACCTGTAGAGCCACCGACT 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACCGACCATATGATTCAGGATGATTCCCTCAACGTTCCTCCACCTGTAGAGCCACCGACT 359
Query 360 GATGATCCTATTGCTAAGGAGTTCGAGCCCATCGATTCTGGAAGCGAACTCGAGGAAGAC 419
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 360 GATGATCCTATTGCTAAGGAGTTCGAGCCCATTGATTCTGGAAGCGAACTTGAGGAAGAC 419
Query 420 GATCTTAAGACTGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCG 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATCTTAAGACAGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCG 479
Query 480 CTTACCACTATGCAACGCACACATATAAGACGTTTGGTGGAGAAACATGGTGATGACATT 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 CTTACCACTATGCAACGCACACATATAAGGCGTTTGGTGGAGAAACATGGTGATGACATT 539
Query 540 GAGGGCATGTACCGTGACAGAAAGCTAAACTCAATGCAGCATACGGTTGCAACACTTCGA 599
|||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 540 GAGGGCATGTACCGAGACAGGAAGCTAAACTCGATGCAGCATTCGGTTGCAACACTTCGA 599
Query 600 AAGCTATGCACGAGATATCAGATTTACAAAGACAAGAACCCGATTTTAGTTCCATGATGT 659
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 AAGCTATGTACGAGATATCAGATTTACAAAGACAAGAACCCGATTTTAGTTTCATGATGA 659
Query 660 TGATGATGAGGTCTTTGTATC-TTGTGTTCAATTTTGTTATAAACTTGCAACAACACTAC 718
||||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 660 TGATGATGA--TCTCTGTATCCTT-TGTTCAATTTTGTTATAAACTTGCAACAACACTAC 716
Query 719 AATGGTTATGAAGTTTCTATAAA 741
|||||||||||||||||||||||
Sbjct 717 AATGGTTATGAAGTTTCTATAAA 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5