BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470256
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02880.3 | Symbols: TPK1 | thiamin pyrophosphokinase1 | chr1... 1393 0.0
AT2G44750.2 | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr... 1253 0.0
> AT1G02880.3 | Symbols: TPK1 | thiamin pyrophosphokinase1 | chr1:642752-644539
REVERSE LENGTH=1169
Length=1169
Score = 1393 bits (754), Expect = 0.0
Identities = 1000/1110 (90%), Gaps = 51/1110 (5%)
Strand=Plus/Plus
Query 62 AGCCATGGATGTTATGCTTCACTCTTCAAGCTTTCTCCTCCCTTCGAACCCCGTCGACGA 121
|||||||||||||||| ||||||||||||||||||||||||||| | || ||| |
Sbjct 60 AGCCATGGATGTTATGATTCACTCTTCAAGCTTTCTCCTCCCTT-G-----CGACGA-AA 112
Query 122 -TACTACAGGGACGAGATACGCTCTCATTGTTCTTAACCAGAGTTTACCACGATTCACTC 180
|| |||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 113 CTAGTACAGGGACGAGATACGCTCTCGTTGTTCTGAACCAGAGTTTGCCACGATTCACTC 172
Query 181 CTCTTCTTTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCT 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CTCTTCTCTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCT 232
Query 241 ACGACGAATTACCTCTCTTCTTCCCTCATGAAGACGCTTTGGCCATTCGAAACAGGTATA 300
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 233 ACGACGAATTGCCTCTCTTCTTCCCTAATGAAGACGCTTTGGCCATTCGAAACAGGTATA 292
Query 301 AGCCGGATGTTATCAAGGGAGATATGGATTCTATTCGGCGTGACGTCCTCGACTTTTATG 360
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 293 AGCCGGATGTTATCAAAGGAGATATGGATTCTATACGTCGTGACGTCCTCGACTTTTATA 352
Query 361 TTAACTTGGGAACTAAAGTTATAGATGAATCTCAAGATCAAGATACCACTGATCTTGATA 420
| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 353 TAAACTTGGGAACTAAGGTTATAGATGAATCTCATGATCAAGACACCACAGATCTTGATA 412
Query 421 AATGCATTTTGTATATCCGTGACTCTACTTTGAATCAAGAGACTTCCAGACTCCAGATTC 480
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 413 AATGCATTTTGTATATCCGTCACTCTACTTTGAATCAAGAGACTTCCGGACTCCAGATTC 472
Query 481 TTGCCACTGGAGCACTTGGTGGAAGATTTGATCATGAAGCCGGTAATCTCAATGTCTTAT 540
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 473 TTGCCACTGGAGCACTTGGAGGAAGATTTGATCATGAAGCCGGTAATCTCAACGTCTTAT 532
Query 541 ATCGATATCCAGATACAAGGATAGTCCTTTTATCTGATGATTGCCTCATCCAACTCCTTC 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 533 ATCGATATCCAGATACAAGGATAGTCCTTTTATCTGACGATTGCCTCATCCAACTCCTTC 592
Query 601 CAAAGAGTCATCGACATGAAATACATATTCAGTCTTCTCTTGAAGGACCTCACTGTGGAC 660
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 593 CAAAGACTCATCGACATGAAATACATATTCAGTCTTCTCTAGAAGGGCCTCACTGTGGAC 652
Query 661 TCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTAAATGGGATCTCA 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 653 TCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTCAATGGGATCTCA 712
Query 721 CCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCAAACTTGGTTAAAGAAGAGA 780
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 713 GCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCCAACTTGGTTAAAGAAGAGA 772
Query 781 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 832
Query 841 TTTCCATAGAAGACCATACACCTTAGGCGCGGT------A-ACA----A--A-ATTATAC 886
|||||||| ||||||||||||||||||| |||| | ||| | | |||||||
Sbjct 833 TTTCCATACAAGACCATACACCTTAGGCCCGGTAACAAAACACACTTTAGTATATTATAC 892
Query 887 GCCACTATTATATTCCTGATGCATCGAATTACTTCAACATTATTGTGTTGATTTGTT-TT 945
|| ||||| || ||||||||||| |||| || ||||||||||||||||||||||||| ||
Sbjct 893 GCTACTATGATGTTCCTGATGCAACGAACTAGTTCAACATTATTGTGTTGATTTGTTGTT 952
Query 946 CACTGTACCAGC-AATGATACCTG-----TTAC-CT-G-TA-CCATT---A--C---TGT 987
|||||||| ||| ||| |||| || |||| | | || |||| | | | |
Sbjct 953 CACTGTACTAGCTAATAATACTTGTACCATTACTGTCGTTATACATTAAGATGCTTTTTT 1012
Query 988 C----GTTAT-ACATAAGATTAT-TATTTCTTTG--GTTTTGTCATTACTCAAAATTGTG 1039
| ||| | ||| | |||| | ||||| | |||||| ||||||||||||||
Sbjct 1013 CTTTGGTTCTGTCAT-TGTTTATGTGGGGCTTTGTTGATTTGTC-GTACTCAAAATTGTG 1070
Query 1040 ATTGGATGTTGGTTAGATATTGGAATCTACTTGTGCCGTATATGAGAACAGACAAAATTC 1099
| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1071 ACTGGATGTTGGTTAGATATTGGAATCTACTTGTGCGGTATATGAGAAAAGACAAAATTC 1130
Query 1100 AAAAGGTGAATGACTACGATAGGGCATATG 1129
|||||||||||||||||||| | |||||||
Sbjct 1131 AAAAGGTGAATGACTACGATTGAGCATATG 1160
> AT2G44750.2 | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr2:18451426-18452875
FORWARD LENGTH=1009
Length=1009
Score = 1253 bits (678), Expect = 0.0
Identities = 834/907 (92%), Gaps = 20/907 (2%)
Strand=Plus/Plus
Query 62 AGCCATGGATGTTATGCTTCACTCTTCAAGCTTTCTCCTCCCTTCGAACCCCGTCGACGA 121
|||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 93 AGCCATGGATGTTATGATTCACTCTTCAAGCTTTCTCCTCCCTT--------G-CGACGA 143
Query 122 TACTACAGGGACGAGATACGCTCTCATTGTTCTTAACCAGAGTTTACCACGATTCACTCC 181
||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 144 AACTTGTGGGACGAGATACGCTCTCGTTGTTCTTAACCAGAATTTACCACGATTCACTCC 203
Query 182 TCTTCTTTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCTA 241
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TCTTCTCTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCTA 263
Query 242 CGACGAATTACCTCTCTTCTTCCCTCATGAAGACGCTTTGGCCATTCGAAACAGGTATAA 301
||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||
Sbjct 264 CGACGAATTACCTCTCTTCTTCCCTCACGAAGACCCTTTTGTCATTCGAAACAGGTATAA 323
Query 302 GCCGGATGTTATCAAGGGAGATATGGATTCTATTCGGCGTGACGTCCTCGACTTTTATGT 361
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 324 GCCCGATGTTATCAAGGGAGATATGGATTCTATACGCCGTGACGTCCTCGACTTTTATGT 383
Query 362 TAACTTGGGAACTAAAGTTATAGATGAATCTCAAGATCAAGATACCACTGATCTTGATAA 421
| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 384 TTACTGGGGAACTAAGGTTATAGATGAATCTCATGATCAAGATACCACTGATCTTGATAA 443
Query 422 ATGCATTTTGTATATCCGTGACTCTACTTTGAATCAAGAGACTTCCAGACTCCAGATTCT 481
|||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 444 ATGCATTTCGTATATCCGTCACTCTACTTTGAATCAGGAGAGTTCCAGACTCCAGATTCT 503
Query 482 TGCCACTGGAGCACTTGGTGGAAGATTTGATCATGAAGCCGGTAATCTCAATGTCTTATA 541
||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 504 TGCCACTGGAGCACTCGGGGGAAGATTCGATCATGAAGCCGGTAATCTCAACGTCTTATA 563
Query 542 TCGATATCCAGATACAAGGATAGTCCTTTTATCTGATGATTGCCTCATCCAACTCCTTCC 601
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 564 TCGATATCCAGACACAAGGATAGTCCTTTTATCTGATGATTGTCTCATCCAACTCCTTCC 623
Query 602 AAAGAGTCATCGACATGAAATACATATTCAGTCTTCTCTTGAAGGACCTCACTGTGGACT 661
||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 624 AAAGACTCATCGACATGAAATACATATTCACTCTTCTCTTCAAGGACCTCACTGTGGACT 683
Query 662 CATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTAAATGGGATCTCAC 721
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 684 TATACCCATTGGAACTCCATCTGCCAATACCACTACCTCAGGGCTTAAATGGGATCTCAG 743
Query 722 CAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCAAACTTGGTTAAAGAAGAGAA 781
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 744 CAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCGAACTTGGTTAAAGAAGAGAT 803
Query 782 AATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGACT 841
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 804 AATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATTTCCATCAAGAAGACAGGACT 863
Query 842 TTCCA-TAGAAGACCATACACCTTAG-GCGCGGTAA-CAAAA-TT--ATACGCCACTATT 895
| || || ||||||||| ||||||| | ||| | | | || |||||| ||||||
Sbjct 864 T-CCTGTACAAGACCATAAACCTTAGTG-GCGCCACTCTTTAGTTTTATACGCTACTATT 921
Query 896 ATATTCCTGATGCATCGAA---TTACTTCAACATTATTGTGTTGATTTGTTTTCACTGTA 952
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 922 ATATTCATGATGCATCGAAGAATTACTTCAACATTATTGTGTTGATTTGTTTTCACTATA 981
Query 953 CCAGCAA 959
|||||||
Sbjct 982 CCAGCAA 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5