BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470256 Length=1129 Score E Sequences producing significant alignments: (Bits) Value AT1G02880.3 | Symbols: TPK1 | thiamin pyrophosphokinase1 | chr1... 1393 0.0 AT2G44750.2 | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr... 1253 0.0 > AT1G02880.3 | Symbols: TPK1 | thiamin pyrophosphokinase1 | chr1:642752-644539 REVERSE LENGTH=1169 Length=1169 Score = 1393 bits (754), Expect = 0.0 Identities = 1000/1110 (90%), Gaps = 51/1110 (5%) Strand=Plus/Plus Query 62 AGCCATGGATGTTATGCTTCACTCTTCAAGCTTTCTCCTCCCTTCGAACCCCGTCGACGA 121 |||||||||||||||| ||||||||||||||||||||||||||| | || ||| | Sbjct 60 AGCCATGGATGTTATGATTCACTCTTCAAGCTTTCTCCTCCCTT-G-----CGACGA-AA 112 Query 122 -TACTACAGGGACGAGATACGCTCTCATTGTTCTTAACCAGAGTTTACCACGATTCACTC 180 || |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct 113 CTAGTACAGGGACGAGATACGCTCTCGTTGTTCTGAACCAGAGTTTGCCACGATTCACTC 172 Query 181 CTCTTCTTTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCT 240 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 CTCTTCTCTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCT 232 Query 241 ACGACGAATTACCTCTCTTCTTCCCTCATGAAGACGCTTTGGCCATTCGAAACAGGTATA 300 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 233 ACGACGAATTGCCTCTCTTCTTCCCTAATGAAGACGCTTTGGCCATTCGAAACAGGTATA 292 Query 301 AGCCGGATGTTATCAAGGGAGATATGGATTCTATTCGGCGTGACGTCCTCGACTTTTATG 360 |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct 293 AGCCGGATGTTATCAAAGGAGATATGGATTCTATACGTCGTGACGTCCTCGACTTTTATA 352 Query 361 TTAACTTGGGAACTAAAGTTATAGATGAATCTCAAGATCAAGATACCACTGATCTTGATA 420 | |||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 353 TAAACTTGGGAACTAAGGTTATAGATGAATCTCATGATCAAGACACCACAGATCTTGATA 412 Query 421 AATGCATTTTGTATATCCGTGACTCTACTTTGAATCAAGAGACTTCCAGACTCCAGATTC 480 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 413 AATGCATTTTGTATATCCGTCACTCTACTTTGAATCAAGAGACTTCCGGACTCCAGATTC 472 Query 481 TTGCCACTGGAGCACTTGGTGGAAGATTTGATCATGAAGCCGGTAATCTCAATGTCTTAT 540 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 473 TTGCCACTGGAGCACTTGGAGGAAGATTTGATCATGAAGCCGGTAATCTCAACGTCTTAT 532 Query 541 ATCGATATCCAGATACAAGGATAGTCCTTTTATCTGATGATTGCCTCATCCAACTCCTTC 600 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 533 ATCGATATCCAGATACAAGGATAGTCCTTTTATCTGACGATTGCCTCATCCAACTCCTTC 592 Query 601 CAAAGAGTCATCGACATGAAATACATATTCAGTCTTCTCTTGAAGGACCTCACTGTGGAC 660 |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 593 CAAAGACTCATCGACATGAAATACATATTCAGTCTTCTCTAGAAGGGCCTCACTGTGGAC 652 Query 661 TCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTAAATGGGATCTCA 720 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 653 TCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTCAATGGGATCTCA 712 Query 721 CCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCAAACTTGGTTAAAGAAGAGA 780 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 713 GCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCCAACTTGGTTAAAGAAGAGA 772 Query 781 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 832 Query 841 TTTCCATAGAAGACCATACACCTTAGGCGCGGT------A-ACA----A--A-ATTATAC 886 |||||||| ||||||||||||||||||| |||| | ||| | | ||||||| Sbjct 833 TTTCCATACAAGACCATACACCTTAGGCCCGGTAACAAAACACACTTTAGTATATTATAC 892 Query 887 GCCACTATTATATTCCTGATGCATCGAATTACTTCAACATTATTGTGTTGATTTGTT-TT 945 || ||||| || ||||||||||| |||| || ||||||||||||||||||||||||| || Sbjct 893 GCTACTATGATGTTCCTGATGCAACGAACTAGTTCAACATTATTGTGTTGATTTGTTGTT 952 Query 946 CACTGTACCAGC-AATGATACCTG-----TTAC-CT-G-TA-CCATT---A--C---TGT 987 |||||||| ||| ||| |||| || |||| | | || |||| | | | | Sbjct 953 CACTGTACTAGCTAATAATACTTGTACCATTACTGTCGTTATACATTAAGATGCTTTTTT 1012 Query 988 C----GTTAT-ACATAAGATTAT-TATTTCTTTG--GTTTTGTCATTACTCAAAATTGTG 1039 | ||| | ||| | |||| | ||||| | |||||| |||||||||||||| Sbjct 1013 CTTTGGTTCTGTCAT-TGTTTATGTGGGGCTTTGTTGATTTGTC-GTACTCAAAATTGTG 1070 Query 1040 ATTGGATGTTGGTTAGATATTGGAATCTACTTGTGCCGTATATGAGAACAGACAAAATTC 1099 | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1071 ACTGGATGTTGGTTAGATATTGGAATCTACTTGTGCGGTATATGAGAAAAGACAAAATTC 1130 Query 1100 AAAAGGTGAATGACTACGATAGGGCATATG 1129 |||||||||||||||||||| | ||||||| Sbjct 1131 AAAAGGTGAATGACTACGATTGAGCATATG 1160 > AT2G44750.2 | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr2:18451426-18452875 FORWARD LENGTH=1009 Length=1009 Score = 1253 bits (678), Expect = 0.0 Identities = 834/907 (92%), Gaps = 20/907 (2%) Strand=Plus/Plus Query 62 AGCCATGGATGTTATGCTTCACTCTTCAAGCTTTCTCCTCCCTTCGAACCCCGTCGACGA 121 |||||||||||||||| ||||||||||||||||||||||||||| | |||||| Sbjct 93 AGCCATGGATGTTATGATTCACTCTTCAAGCTTTCTCCTCCCTT--------G-CGACGA 143 Query 122 TACTACAGGGACGAGATACGCTCTCATTGTTCTTAACCAGAGTTTACCACGATTCACTCC 181 ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 144 AACTTGTGGGACGAGATACGCTCTCGTTGTTCTTAACCAGAATTTACCACGATTCACTCC 203 Query 182 TCTTCTTTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCTA 241 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 TCTTCTCTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCTA 263 Query 242 CGACGAATTACCTCTCTTCTTCCCTCATGAAGACGCTTTGGCCATTCGAAACAGGTATAA 301 ||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||| Sbjct 264 CGACGAATTACCTCTCTTCTTCCCTCACGAAGACCCTTTTGTCATTCGAAACAGGTATAA 323 Query 302 GCCGGATGTTATCAAGGGAGATATGGATTCTATTCGGCGTGACGTCCTCGACTTTTATGT 361 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 324 GCCCGATGTTATCAAGGGAGATATGGATTCTATACGCCGTGACGTCCTCGACTTTTATGT 383 Query 362 TAACTTGGGAACTAAAGTTATAGATGAATCTCAAGATCAAGATACCACTGATCTTGATAA 421 | ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 384 TTACTGGGGAACTAAGGTTATAGATGAATCTCATGATCAAGATACCACTGATCTTGATAA 443 Query 422 ATGCATTTTGTATATCCGTGACTCTACTTTGAATCAAGAGACTTCCAGACTCCAGATTCT 481 |||||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||| Sbjct 444 ATGCATTTCGTATATCCGTCACTCTACTTTGAATCAGGAGAGTTCCAGACTCCAGATTCT 503 Query 482 TGCCACTGGAGCACTTGGTGGAAGATTTGATCATGAAGCCGGTAATCTCAATGTCTTATA 541 ||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||| Sbjct 504 TGCCACTGGAGCACTCGGGGGAAGATTCGATCATGAAGCCGGTAATCTCAACGTCTTATA 563 Query 542 TCGATATCCAGATACAAGGATAGTCCTTTTATCTGATGATTGCCTCATCCAACTCCTTCC 601 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 564 TCGATATCCAGACACAAGGATAGTCCTTTTATCTGATGATTGTCTCATCCAACTCCTTCC 623 Query 602 AAAGAGTCATCGACATGAAATACATATTCAGTCTTCTCTTGAAGGACCTCACTGTGGACT 661 ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 624 AAAGACTCATCGACATGAAATACATATTCACTCTTCTCTTCAAGGACCTCACTGTGGACT 683 Query 662 CATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTAAATGGGATCTCAC 721 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| Sbjct 684 TATACCCATTGGAACTCCATCTGCCAATACCACTACCTCAGGGCTTAAATGGGATCTCAG 743 Query 722 CAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCAAACTTGGTTAAAGAAGAGAA 781 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 744 CAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCGAACTTGGTTAAAGAAGAGAT 803 Query 782 AATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGACT 841 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 804 AATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATTTCCATCAAGAAGACAGGACT 863 Query 842 TTCCA-TAGAAGACCATACACCTTAG-GCGCGGTAA-CAAAA-TT--ATACGCCACTATT 895 | || || ||||||||| ||||||| | ||| | | | || |||||| |||||| Sbjct 864 T-CCTGTACAAGACCATAAACCTTAGTG-GCGCCACTCTTTAGTTTTATACGCTACTATT 921 Query 896 ATATTCCTGATGCATCGAA---TTACTTCAACATTATTGTGTTGATTTGTTTTCACTGTA 952 |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 922 ATATTCATGATGCATCGAAGAATTACTTCAACATTATTGTGTTGATTTGTTTTCACTATA 981 Query 953 CCAGCAA 959 ||||||| Sbjct 982 CCAGCAA 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55371201135 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5