BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470261

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02900.1 | Symbols: RALFL1, RALF1, ATRALF1 | rapid alkaliniz...   745    0.0  


> AT1G02900.1 | Symbols: RALFL1, RALF1, ATRALF1 | rapid alkalinization 
factor 1 | chr1:653765-654343 REVERSE LENGTH=579
Length=579

 Score =  745 bits (403),  Expect = 0.0
 Identities = 512/563 (91%), Gaps = 13/563 (2%)
 Strand=Plus/Plus

Query  1    AAAATGGCCAAGTCCTTCCCTCTGTTCTTAAGTCTTACGATTCTCATAATTTTCATCATC  60
            ||||||| |||||||||  |||||||||||| ||||||||||||| |  | |||||||||
Sbjct  3    AAAATGGACAAGTCCTTTACTCTGTTCTTAACTCTTACGATTCTCGTCGTCTTCATCATC  62

Query  61   TCTTCACCTCCGGTCCAAGCCGGCTTCGCCAACAACCTCGATGGTCTAGAATGGGCTACG  120
            ||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||
Sbjct  63   TCTTCACCTCCGGTCCAAGCCGGCTTCGCCAACGACCTCGGTGGTGTAGCATGGGCTACG  122

Query  121  AATGGAGTCCATGGTTCAGGCTGCCACGGTTCAATAGCAGAGTGTATCGGAGCGGAGGAA  180
            | ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  123  ACTGGAGACAATGGTTCAGGCTGCCACGGTTCAATAGCAGAGTGTATCGGGGCGGAGGAA  182

Query  181  GAAGAAATGGACTCAGAGATCAATAGAAGAATATTGGCGACCACAAAATACATAAGTTAT  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  183  GAAGAAATGGACTCAGAGATCAATAGAAGAATATTGGCGACCACAAAATACATAAGCTAT  242

Query  241  CAATCTTTGAAACGGAACAGTGTACCTTGTTCAAGAAGAGGTGCGTCTTATTACAATTGT  300
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  243  CAGTCTTTGAAACGGAACAGTGTGCCTTGTTCAAGAAGAGGTGCGTCTTATTACAATTGT  302

Query  301  CGGAACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCGCAATTTCGCGATGCAGG  360
            | ||||||||||||||||||||||||||||||||||||||||  |||| | || ||||||
Sbjct  303  CAGAACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCAAAATTGCTCGTTGCAGG  362

Query  361  AGTTAGAATTACaaaaaaaGAAGGCTATATATCTTCTTGATCTTGACTTATGTTTTCTTT  420
            |||||||  |||||| || ||| |||||    ||||||||||||||||||||||||||||
Sbjct  363  AGTTAGACCTACAAACAA-GAAAGCTAT----CTTCTTGATCTTGACTTATGTTTTCTTT  417

Query  421  GATCCATCAAGTGTTTTTATTTT--T-A--T-T--AAATATTCATCATGTCTCTGCACAA  472
            ||||||||||| ||||| |||||  | |  | |  |||||||||||||||||||||||||
Sbjct  418  GATCCATCAAGCGTTTTCATTTTAATTAAATCTTTAAATATTCATCATGTCTCTGCACAA  477

Query  473  TAGTAAAAACCTATGTTTTGATCAAACCGGGTTGCTTTGTTATATTGTATGTGAATAATC  532
            ||||||| ||||||||||||||||||  |||||| ||||| ||||| |||||||||||||
Sbjct  478  TAGTAAAGACCTATGTTTTGATCAAATTGGGTTGATTTGTAATATTTTATGTGAATAATC  537

Query  533  AGGGTCTTAATGATCCATGAAGT  555
            | |||||||||||||||||||||
Sbjct  538  ATGGTCTTAATGATCCATGAAGT  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5